Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 AC120114.3-201ENST00000611923 658 ntBASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 AC005593.1-201ENST00000624894 515 ntBASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM39Q9HCM9 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM39Q9HCM9 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 RPL13AP23-201ENST00000480739 586 ntBASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 AC117500.6-201ENST00000624871 588 ntBASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM39Q9HCM9 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 PTCHD3P3-201ENST00000403073 906 ntBASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM39Q9HCM9 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms