Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS35Q96QK1 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
VPS35Q96QK1 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS35Q96QK1 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS35Q96QK1 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
VPS35Q96QK1 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
VPS35Q96QK1 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
VPS35Q96QK1 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS35Q96QK1 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS35Q96QK1 AL023806.1-201ENST00000603994 1649 ntBASIC17.07■□□□□ 0.32
VPS35Q96QK1 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS35Q96QK1 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 EGFEM1P-202ENST00000431685 1563 ntBASIC17.06■□□□□ 0.32
VPS35Q96QK1 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS35Q96QK1 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS35Q96QK1 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS35Q96QK1 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS35Q96QK1 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS35Q96QK1 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS35Q96QK1 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS35Q96QK1 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS35Q96QK1 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS35Q96QK1 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS35Q96QK1 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS35Q96QK1 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS35Q96QK1 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS35Q96QK1 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS35Q96QK1 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS35Q96QK1 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS35Q96QK1 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
VPS35Q96QK1 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS35Q96QK1 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS35Q96QK1 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS35Q96QK1 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS35Q96QK1 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VPS35Q96QK1 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VPS35Q96QK1 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 AC141586.5-201ENST00000624546 2050 ntBASIC17.05■□□□□ 0.32
VPS35Q96QK1 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS35Q96QK1 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS35Q96QK1 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS35Q96QK1 AP002414.1-201ENST00000391405 1147 ntBASIC17.05■□□□□ 0.32
VPS35Q96QK1 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 AC092910.1-201ENST00000482027 1129 ntBASIC17.05■□□□□ 0.32
VPS35Q96QK1 IGHV3-22-201ENST00000520721 359 ntBASIC17.05■□□□□ 0.32
VPS35Q96QK1 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VPS35Q96QK1 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 AC005593.1-201ENST00000624894 515 ntBASIC17.05■□□□□ 0.32
VPS35Q96QK1 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.05■□□□□ 0.32
VPS35Q96QK1 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS35Q96QK1 TNRC18P3-201ENST00000441896 2691 ntBASIC17.05■□□□□ 0.32
VPS35Q96QK1 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS35Q96QK1 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS35Q96QK1 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS35Q96QK1 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS35Q96QK1 AC099398.1-201ENST00000567919 2776 ntBASIC17.05■□□□□ 0.32
VPS35Q96QK1 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.05■□□□□ 0.32
VPS35Q96QK1 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS35Q96QK1 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS35Q96QK1 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS35Q96QK1 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS35Q96QK1 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms