Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 AL671883.3-201ENST00000603274 991 ntBASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 PRKN-208ENST00000610470 531 ntTSL 2 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 PRKN-209ENST00000612485 225 ntTSL 5 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 BX640515.1-201ENST00000617215 977 ntBASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 AP001094.4-201ENST00000579008 2176 ntBASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 RPL13AP23-201ENST00000480739 586 ntBASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 AC139887.3-201ENST00000568585 713 ntBASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 CYGB-205ENST00000590175 830 ntTSL 3 BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 TK1-204ENST00000590430 683 ntTSL 3 BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CHMP4CQ96CF2 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 TEX30-205ENST00000376029 959 ntTSL 2 BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 AC093909.1-201ENST00000504731 1122 ntBASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
CHMP4CQ96CF2 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms