Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 SPDYE21P-201ENST00000413323 827 ntBASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 AL020989.1-201ENST00000422979 469 ntBASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 TNRC18P3-201ENST00000441896 2691 ntBASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD3Q3KNS1 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 PRORSD1P-202ENST00000563365 2154 ntBASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 AC018712.1-201ENST00000455767 687 ntBASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 SCARNA2-201ENST00000458748 420 ntBASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 SART3-203ENST00000546611 1184 ntBASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 AL049840.3-201ENST00000602669 611 ntBASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 AC060834.1-201ENST00000443027 2032 ntBASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD3Q3KNS1 AC009053.2-201ENST00000563701 2365 ntBASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 AD000864.1-201ENST00000624076 2295 ntBASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 SIGLEC30P-201ENST00000455569 941 ntBASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PTCHD3Q3KNS1 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTCHD3Q3KNS1 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms