Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 DFFBP1-201ENST00000433250 979 ntBASIC19.79■□□□□ 0.76
CTCFP49711 AC009477.1-201ENST00000452936 217 ntBASIC19.79■□□□□ 0.76
CTCFP49711 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC19.79■□□□□ 0.76
CTCFP49711 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC19.79■□□□□ 0.76
CTCFP49711 AL138828.2-201ENST00000615812 383 ntBASIC19.79■□□□□ 0.76
CTCFP49711 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
CTCFP49711 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC19.79■□□□□ 0.76
CTCFP49711 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CTCFP49711 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTCFP49711 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTCFP49711 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTCFP49711 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTCFP49711 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CTCFP49711 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CTCFP49711 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTCFP49711 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
CTCFP49711 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
CTCFP49711 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CTCFP49711 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CTCFP49711 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CTCFP49711 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTCFP49711 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CTCFP49711 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CTCFP49711 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
CTCFP49711 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.78■□□□□ 0.76
CTCFP49711 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CTCFP49711 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC19.78■□□□□ 0.76
CTCFP49711 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTCFP49711 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTCFP49711 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTCFP49711 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTCFP49711 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTCFP49711 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC19.78■□□□□ 0.76
CTCFP49711 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTCFP49711 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC19.78■□□□□ 0.76
CTCFP49711 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC19.78■□□□□ 0.76
CTCFP49711 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC19.78■□□□□ 0.76
CTCFP49711 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC19.78■□□□□ 0.76
CTCFP49711 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC19.78■□□□□ 0.76
CTCFP49711 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC19.78■□□□□ 0.76
CTCFP49711 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTCFP49711 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC19.78■□□□□ 0.76
CTCFP49711 AL109936.8-201ENST00000641772 604 ntBASIC19.78■□□□□ 0.76
CTCFP49711 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTCFP49711 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC19.78■□□□□ 0.76
CTCFP49711 AL391825.1-201ENST00000457671 1364 ntBASIC19.78■□□□□ 0.76
CTCFP49711 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CTCFP49711 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTCFP49711 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.78■□□□□ 0.76
CTCFP49711 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTCFP49711 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTCFP49711 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC19.78■□□□□ 0.76
CTCFP49711 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTCFP49711 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CTCFP49711 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CTCFP49711 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CTCFP49711 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CTCFP49711 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC19.77■□□□□ 0.76
CTCFP49711 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CTCFP49711 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CTCFP49711 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.77■□□□□ 0.76
CTCFP49711 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CTCFP49711 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CTCFP49711 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
CTCFP49711 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
CTCFP49711 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC19.77■□□□□ 0.76
CTCFP49711 TTTY23B-201ENST00000442790 549 ntBASIC19.77■□□□□ 0.76
CTCFP49711 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC19.77■□□□□ 0.76
CTCFP49711 STK25P1-201ENST00000585406 838 ntBASIC19.77■□□□□ 0.76
CTCFP49711 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CTCFP49711 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC19.77■□□□□ 0.76
CTCFP49711 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
CTCFP49711 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
CTCFP49711 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CTCFP49711 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTCFP49711 AL590787.1-201ENST00000568856 1315 ntBASIC19.76■□□□□ 0.75
CTCFP49711 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTCFP49711 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC19.76■□□□□ 0.75
CTCFP49711 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CTCFP49711 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CTCFP49711 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTCFP49711 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTCFP49711 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.76■□□□□ 0.75
CTCFP49711 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CTCFP49711 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC19.76■□□□□ 0.75
CTCFP49711 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTCFP49711 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CTCFP49711 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.76■□□□□ 0.75
CTCFP49711 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CTCFP49711 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC19.76■□□□□ 0.75
CTCFP49711 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC19.76■□□□□ 0.75
CTCFP49711 AC008738.7-201ENST00000609744 511 ntBASIC19.76■□□□□ 0.75
CTCFP49711 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTCFP49711 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CTCFP49711 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTCFP49711 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CTCFP49711 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.76■□□□□ 0.75
CTCFP49711 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CTCFP49711 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTCFP49711 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms