Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.22■□□□□ 0.19
SOX3P41225 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.22■□□□□ 0.19
SOX3P41225 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.22■□□□□ 0.19
SOX3P41225 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 KRT18P67-201ENST00000432816 1264 ntBASIC16.22■□□□□ 0.19
SOX3P41225 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.22■□□□□ 0.19
SOX3P41225 AF186996.4-201ENST00000467186 377 ntBASIC16.22■□□□□ 0.19
SOX3P41225 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.22■□□□□ 0.19
SOX3P41225 SART3-203ENST00000546611 1184 ntBASIC16.22■□□□□ 0.19
SOX3P41225 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.22■□□□□ 0.19
SOX3P41225 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.22■□□□□ 0.19
SOX3P41225 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.22■□□□□ 0.19
SOX3P41225 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.22■□□□□ 0.19
SOX3P41225 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SOX3P41225 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.22■□□□□ 0.19
SOX3P41225 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SOX3P41225 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.22■□□□□ 0.19
SOX3P41225 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX3P41225 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX3P41225 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX3P41225 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX3P41225 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.21■□□□□ 0.19
SOX3P41225 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
SOX3P41225 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.21■□□□□ 0.19
SOX3P41225 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.21■□□□□ 0.19
SOX3P41225 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.21■□□□□ 0.19
SOX3P41225 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SOX3P41225 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX3P41225 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX3P41225 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SOX3P41225 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.21■□□□□ 0.19
SOX3P41225 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
SOX3P41225 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.21■□□□□ 0.19
SOX3P41225 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.21■□□□□ 0.19
SOX3P41225 AC073648.2-201ENST00000510116 352 ntBASIC16.21■□□□□ 0.19
SOX3P41225 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.21■□□□□ 0.19
SOX3P41225 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.21■□□□□ 0.19
SOX3P41225 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.21■□□□□ 0.19
SOX3P41225 AC064862.7-201ENST00000604520 867 ntBASIC16.21■□□□□ 0.19
SOX3P41225 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.21■□□□□ 0.19
SOX3P41225 AL773604.1-201ENST00000617417 272 ntBASIC16.21■□□□□ 0.19
SOX3P41225 AL139288.1-201ENST00000623748 933 ntBASIC16.21■□□□□ 0.19
SOX3P41225 AC148477.8-201ENST00000624298 468 ntBASIC16.21■□□□□ 0.19
SOX3P41225 AC073592.5-201ENST00000624854 528 ntBASIC16.21■□□□□ 0.19
SOX3P41225 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX3P41225 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX3P41225 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX3P41225 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.21■□□□□ 0.19
SOX3P41225 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
SOX3P41225 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SOX3P41225 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
SOX3P41225 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX3P41225 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
SOX3P41225 AL049757.1-201ENST00000616842 1596 ntBASIC16.21■□□□□ 0.18
SOX3P41225 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SOX3P41225 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.21■□□□□ 0.18
SOX3P41225 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
SOX3P41225 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.21■□□□□ 0.18
SOX3P41225 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.2■□□□□ 0.18
SOX3P41225 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.2■□□□□ 0.18
SOX3P41225 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
SOX3P41225 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SOX3P41225 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
SOX3P41225 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
SOX3P41225 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.2■□□□□ 0.18
SOX3P41225 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.2■□□□□ 0.18
SOX3P41225 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.2■□□□□ 0.18
SOX3P41225 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SOX3P41225 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.2■□□□□ 0.18
SOX3P41225 RNPS1P1-201ENST00000507437 918 ntBASIC16.2■□□□□ 0.18
SOX3P41225 AC079776.4-201ENST00000511039 504 ntBASIC16.2■□□□□ 0.18
SOX3P41225 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.2■□□□□ 0.18
SOX3P41225 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.2■□□□□ 0.18
SOX3P41225 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.2■□□□□ 0.18
SOX3P41225 AC109462.3-201ENST00000573934 613 ntBASIC16.2■□□□□ 0.18
SOX3P41225 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms