Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AL589182.2-201ENST00000619332 1049 ntBASIC16.87■□□□□ 0.29
SHMT2P34897 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.87■□□□□ 0.29
SHMT2P34897 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHMT2P34897 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.87■□□□□ 0.29
SHMT2P34897 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHMT2P34897 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHMT2P34897 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
SHMT2P34897 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHMT2P34897 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.87■□□□□ 0.29
SHMT2P34897 AC004817.3-201ENST00000602957 2129 ntBASIC16.87■□□□□ 0.29
SHMT2P34897 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.87■□□□□ 0.29
SHMT2P34897 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHMT2P34897 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
SHMT2P34897 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SHMT2P34897 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.86■□□□□ 0.29
SHMT2P34897 AC008894.3-201ENST00000624324 3103 ntBASIC16.86■□□□□ 0.29
SHMT2P34897 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHMT2P34897 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHMT2P34897 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHMT2P34897 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
SHMT2P34897 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.86■□□□□ 0.29
SHMT2P34897 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHMT2P34897 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHMT2P34897 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.86■□□□□ 0.29
SHMT2P34897 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SHMT2P34897 LYSMD4-203ENST00000378904 2122 ntBASIC16.86■□□□□ 0.29
SHMT2P34897 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHMT2P34897 AL031284.1-201ENST00000419297 478 ntBASIC16.86■□□□□ 0.29
SHMT2P34897 RPS2P1-201ENST00000434010 821 ntBASIC16.86■□□□□ 0.29
SHMT2P34897 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.86■□□□□ 0.29
SHMT2P34897 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.86■□□□□ 0.29
SHMT2P34897 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
SHMT2P34897 AC148477.8-201ENST00000624298 468 ntBASIC16.86■□□□□ 0.29
SHMT2P34897 AC107918.4-202ENST00000641623 219 ntBASIC16.86■□□□□ 0.29
SHMT2P34897 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SHMT2P34897 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
SHMT2P34897 UBALD1-205ENST00000590891 2641 ntBASIC16.86■□□□□ 0.29
SHMT2P34897 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SHMT2P34897 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
SHMT2P34897 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHMT2P34897 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHMT2P34897 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
SHMT2P34897 NCF1C-201ENST00000438382 1427 ntBASIC16.86■□□□□ 0.29
SHMT2P34897 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHMT2P34897 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.86■□□□□ 0.29
SHMT2P34897 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.86■□□□□ 0.29
SHMT2P34897 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
SHMT2P34897 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.85■□□□□ 0.29
SHMT2P34897 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.85■□□□□ 0.29
SHMT2P34897 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
SHMT2P34897 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
SHMT2P34897 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.85■□□□□ 0.29
SHMT2P34897 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.85■□□□□ 0.29
SHMT2P34897 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.85■□□□□ 0.29
SHMT2P34897 AC139887.3-201ENST00000568585 713 ntBASIC16.85■□□□□ 0.29
SHMT2P34897 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.85■□□□□ 0.29
SHMT2P34897 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 AC046158.3-201ENST00000624947 2558 ntBASIC16.85■□□□□ 0.29
SHMT2P34897 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.85■□□□□ 0.29
SHMT2P34897 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.85■□□□□ 0.29
SHMT2P34897 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.85■□□□□ 0.29
SHMT2P34897 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.85■□□□□ 0.29
SHMT2P34897 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.85■□□□□ 0.29
SHMT2P34897 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.85■□□□□ 0.29
SHMT2P34897 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHMT2P34897 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SHMT2P34897 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.84■□□□□ 0.29
SHMT2P34897 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SHMT2P34897 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SHMT2P34897 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms