Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.84■□□□□ 0.13
ABCD3P28288 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ABCD3P28288 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ABCD3P28288 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCD3P28288 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC15.84■□□□□ 0.13
ABCD3P28288 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
ABCD3P28288 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ABCD3P28288 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ABCD3P28288 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ABCD3P28288 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
ABCD3P28288 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ABCD3P28288 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCD3P28288 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ABCD3P28288 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCD3P28288 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
ABCD3P28288 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
ABCD3P28288 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
ABCD3P28288 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
ABCD3P28288 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC15.83■□□□□ 0.13
ABCD3P28288 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
ABCD3P28288 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
ABCD3P28288 AL139384.1-201ENST00000612143 3047 ntBASIC15.83■□□□□ 0.12
ABCD3P28288 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC15.83■□□□□ 0.12
ABCD3P28288 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCD3P28288 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
ABCD3P28288 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCD3P28288 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.83■□□□□ 0.12
ABCD3P28288 AP002414.1-201ENST00000391405 1147 ntBASIC15.83■□□□□ 0.12
ABCD3P28288 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC15.83■□□□□ 0.12
ABCD3P28288 AL590627.1-203ENST00000421194 1026 ntBASIC15.83■□□□□ 0.12
ABCD3P28288 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCD3P28288 RPS15P9-201ENST00000494093 319 ntBASIC15.83■□□□□ 0.12
ABCD3P28288 IGHV3-22-201ENST00000520721 359 ntBASIC15.83■□□□□ 0.12
ABCD3P28288 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC15.83■□□□□ 0.12
ABCD3P28288 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC15.83■□□□□ 0.12
ABCD3P28288 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.83■□□□□ 0.12
ABCD3P28288 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC15.83■□□□□ 0.12
ABCD3P28288 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
ABCD3P28288 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC15.83■□□□□ 0.12
ABCD3P28288 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC15.83■□□□□ 0.12
ABCD3P28288 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC15.83■□□□□ 0.12
ABCD3P28288 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15.83■□□□□ 0.12
ABCD3P28288 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.83■□□□□ 0.12
ABCD3P28288 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC15.83■□□□□ 0.12
ABCD3P28288 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCD3P28288 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC15.83■□□□□ 0.12
ABCD3P28288 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC15.83■□□□□ 0.12
ABCD3P28288 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
ABCD3P28288 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCD3P28288 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
ABCD3P28288 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCD3P28288 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCD3P28288 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.83■□□□□ 0.12
ABCD3P28288 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
ABCD3P28288 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.83■□□□□ 0.12
ABCD3P28288 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
ABCD3P28288 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ABCD3P28288 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
ABCD3P28288 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ABCD3P28288 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.82■□□□□ 0.12
ABCD3P28288 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCD3P28288 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
ABCD3P28288 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.82■□□□□ 0.12
ABCD3P28288 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCD3P28288 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
ABCD3P28288 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
ABCD3P28288 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCD3P28288 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
ABCD3P28288 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
ABCD3P28288 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
ABCD3P28288 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ABCD3P28288 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCD3P28288 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
ABCD3P28288 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCD3P28288 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
ABCD3P28288 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCD3P28288 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.82■□□□□ 0.12
ABCD3P28288 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC15.82■□□□□ 0.12
ABCD3P28288 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.82■□□□□ 0.12
ABCD3P28288 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC15.82■□□□□ 0.12
ABCD3P28288 BX640515.1-201ENST00000617215 977 ntBASIC15.82■□□□□ 0.12
ABCD3P28288 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.82■□□□□ 0.12
ABCD3P28288 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
ABCD3P28288 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
ABCD3P28288 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC15.82■□□□□ 0.12
ABCD3P28288 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCD3P28288 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCD3P28288 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.82■□□□□ 0.12
ABCD3P28288 IL9RP2-201ENST00000423948 1312 ntBASIC15.82■□□□□ 0.12
ABCD3P28288 TNRC18P3-201ENST00000441896 2691 ntBASIC15.82■□□□□ 0.12
ABCD3P28288 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCD3P28288 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ABCD3P28288 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ABCD3P28288 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.82■□□□□ 0.12
ABCD3P28288 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.82■□□□□ 0.12
ABCD3P28288 LINC02012-201ENST00000608206 1725 ntBASIC15.82■□□□□ 0.12
ABCD3P28288 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCD3P28288 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCD3P28288 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCD3P28288 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms