Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIG1P18858 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
LIG1P18858 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIG1P18858 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
LIG1P18858 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIG1P18858 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIG1P18858 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIG1P18858 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC19.81■□□□□ 0.76
LIG1P18858 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIG1P18858 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIG1P18858 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIG1P18858 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC19.81■□□□□ 0.76
LIG1P18858 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19.81■□□□□ 0.76
LIG1P18858 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.81■□□□□ 0.76
LIG1P18858 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.81■□□□□ 0.76
LIG1P18858 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
LIG1P18858 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIG1P18858 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIG1P18858 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIG1P18858 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIG1P18858 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIG1P18858 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIG1P18858 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.81■□□□□ 0.76
LIG1P18858 VENTXP7-201ENST00000475503 772 ntBASIC19.81■□□□□ 0.76
LIG1P18858 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.81■□□□□ 0.76
LIG1P18858 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIG1P18858 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
LIG1P18858 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.81■□□□□ 0.76
LIG1P18858 AC138894.3-201ENST00000603787 634 ntBASIC19.81■□□□□ 0.76
LIG1P18858 ANKRD20A8P-203ENST00000641373 517 ntBASIC19.81■□□□□ 0.76
LIG1P18858 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.81■□□□□ 0.76
LIG1P18858 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIG1P18858 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIG1P18858 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC19.81■□□□□ 0.76
LIG1P18858 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC19.81■□□□□ 0.76
LIG1P18858 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIG1P18858 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIG1P18858 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIG1P18858 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIG1P18858 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIG1P18858 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC19.8■□□□□ 0.76
LIG1P18858 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG1P18858 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIG1P18858 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG1P18858 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.8■□□□□ 0.76
LIG1P18858 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG1P18858 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC19.8■□□□□ 0.76
LIG1P18858 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC19.8■□□□□ 0.76
LIG1P18858 AC097374.2-201ENST00000618617 1306 ntBASIC19.8■□□□□ 0.76
LIG1P18858 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG1P18858 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG1P18858 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG1P18858 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG1P18858 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
LIG1P18858 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.8■□□□□ 0.76
LIG1P18858 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
LIG1P18858 CICP6-201ENST00000457191 2729 ntBASIC19.8■□□□□ 0.76
LIG1P18858 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG1P18858 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.8■□□□□ 0.76
LIG1P18858 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.8■□□□□ 0.76
LIG1P18858 AL845331.1-201ENST00000424978 1190 ntBASIC19.8■□□□□ 0.76
LIG1P18858 DUSP5P1-201ENST00000441325 1139 ntBASIC19.8■□□□□ 0.76
LIG1P18858 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.8■□□□□ 0.76
LIG1P18858 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.8■□□□□ 0.76
LIG1P18858 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.8■□□□□ 0.76
LIG1P18858 ABR-204ENST00000543210 1049 ntTSL 2 BASIC19.8■□□□□ 0.76
LIG1P18858 ABR-217ENST00000572441 563 ntTSL 4 BASIC19.8■□□□□ 0.76
LIG1P18858 AP005901.3-202ENST00000581653 237 ntBASIC19.8■□□□□ 0.76
LIG1P18858 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.8■□□□□ 0.76
LIG1P18858 Z69720.1-201ENST00000601483 472 ntBASIC19.8■□□□□ 0.76
LIG1P18858 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.8■□□□□ 0.76
LIG1P18858 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIG1P18858 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG1P18858 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG1P18858 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG1P18858 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG1P18858 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIG1P18858 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.8■□□□□ 0.76
LIG1P18858 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC19.8■□□□□ 0.76
LIG1P18858 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIG1P18858 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIG1P18858 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
LIG1P18858 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIG1P18858 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.79■□□□□ 0.76
LIG1P18858 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
LIG1P18858 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
LIG1P18858 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIG1P18858 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIG1P18858 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIG1P18858 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC19.79■□□□□ 0.76
LIG1P18858 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIG1P18858 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIG1P18858 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIG1P18858 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
LIG1P18858 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIG1P18858 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIG1P18858 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.79■□□□□ 0.76
LIG1P18858 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIG1P18858 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIG1P18858 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms