Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A3P12111 GZMB-202ENST00000382540 816 ntTSL 5 BASIC17.65■□□□□ 0.42
COL6A3P12111 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
COL6A3P12111 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC17.65■□□□□ 0.42
COL6A3P12111 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A3P12111 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
COL6A3P12111 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A3P12111 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A3P12111 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
COL6A3P12111 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC17.65■□□□□ 0.42
COL6A3P12111 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A3P12111 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.65■□□□□ 0.42
COL6A3P12111 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A3P12111 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A3P12111 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC17.65■□□□□ 0.42
COL6A3P12111 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A3P12111 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.65■□□□□ 0.42
COL6A3P12111 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC17.65■□□□□ 0.42
COL6A3P12111 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC17.65■□□□□ 0.42
COL6A3P12111 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC17.65■□□□□ 0.42
COL6A3P12111 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC17.65■□□□□ 0.42
COL6A3P12111 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A3P12111 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A3P12111 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
COL6A3P12111 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A3P12111 RN7SL560P-201ENST00000577943 264 ntBASIC17.65■□□□□ 0.42
COL6A3P12111 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.65■□□□□ 0.42
COL6A3P12111 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
COL6A3P12111 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.42
COL6A3P12111 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A3P12111 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A3P12111 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A3P12111 REEP1-202ENST00000453231 940 ntTSL 2 BASIC17.64■□□□□ 0.41
COL6A3P12111 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC17.64■□□□□ 0.41
COL6A3P12111 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC17.64■□□□□ 0.41
COL6A3P12111 AC138627.1-207ENST00000641560 1006 ntBASIC17.64■□□□□ 0.41
COL6A3P12111 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
COL6A3P12111 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A3P12111 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.64■□□□□ 0.41
COL6A3P12111 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.64■□□□□ 0.41
COL6A3P12111 MTND6P24-201ENST00000440466 518 ntBASIC17.64■□□□□ 0.41
COL6A3P12111 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
COL6A3P12111 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A3P12111 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC17.64■□□□□ 0.41
COL6A3P12111 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.64■□□□□ 0.41
COL6A3P12111 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
COL6A3P12111 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
COL6A3P12111 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
COL6A3P12111 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A3P12111 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.63■□□□□ 0.41
COL6A3P12111 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.63■□□□□ 0.41
COL6A3P12111 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A3P12111 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.63■□□□□ 0.41
COL6A3P12111 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC17.63■□□□□ 0.41
COL6A3P12111 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC17.63■□□□□ 0.41
COL6A3P12111 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC17.63■□□□□ 0.41
COL6A3P12111 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC17.63■□□□□ 0.41
COL6A3P12111 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A3P12111 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A3P12111 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A3P12111 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A3P12111 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A3P12111 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A3P12111 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A3P12111 CETN4P-206ENST00000642099 2168 ntBASIC17.63■□□□□ 0.41
COL6A3P12111 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC17.63■□□□□ 0.41
COL6A3P12111 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
COL6A3P12111 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
COL6A3P12111 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
COL6A3P12111 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC17.63■□□□□ 0.41
COL6A3P12111 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC17.63■□□□□ 0.41
COL6A3P12111 SRD5A3P1-201ENST00000603021 949 ntBASIC17.63■□□□□ 0.41
COL6A3P12111 AC093726.1-201ENST00000608064 963 ntBASIC17.63■□□□□ 0.41
COL6A3P12111 TEX48-202ENST00000612244 662 ntTSL 3 BASIC17.63■□□□□ 0.41
COL6A3P12111 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A3P12111 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A3P12111 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A3P12111 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.63■□□□□ 0.41
COL6A3P12111 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.63■□□□□ 0.41
COL6A3P12111 AL135999.2-201ENST00000622438 1686 ntBASIC17.63■□□□□ 0.41
COL6A3P12111 AC105233.2-201ENST00000523697 349 ntBASIC17.63■□□□□ 0.41
COL6A3P12111 AF228730.5-201ENST00000530288 346 ntBASIC17.63■□□□□ 0.41
COL6A3P12111 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.63■□□□□ 0.41
COL6A3P12111 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.62■□□□□ 0.41
COL6A3P12111 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A3P12111 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A3P12111 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A3P12111 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A3P12111 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A3P12111 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A3P12111 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A3P12111 AL662890.1-201ENST00000396818 632 ntBASIC17.62■□□□□ 0.41
COL6A3P12111 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A3P12111 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.62■□□□□ 0.41
COL6A3P12111 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.62■□□□□ 0.41
COL6A3P12111 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.62■□□□□ 0.41
COL6A3P12111 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
COL6A3P12111 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.62■□□□□ 0.41
COL6A3P12111 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.62■□□□□ 0.41
COL6A3P12111 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms