Protein–RNA interactions for Protein: P09630

HOXC6, Homeobox protein Hox-C6, humanhuman

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC6P09630 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC19.31■□□□□ 0.68
HOXC6P09630 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC6P09630 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.31■□□□□ 0.68
HOXC6P09630 AC008677.1-201ENST00000519230 1561 ntBASIC19.31■□□□□ 0.68
HOXC6P09630 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC6P09630 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC6P09630 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
HOXC6P09630 FO538757.1-201ENST00000623083 1397 ntBASIC19.31■□□□□ 0.68
HOXC6P09630 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
HOXC6P09630 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC19.3■□□□□ 0.68
HOXC6P09630 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
HOXC6P09630 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
HOXC6P09630 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 METTL26-204ENST00000397665 558 ntTSL 2 BASIC19.3■□□□□ 0.68
HOXC6P09630 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC19.3■□□□□ 0.68
HOXC6P09630 SPDYE7P-202ENST00000420373 878 ntBASIC19.3■□□□□ 0.68
HOXC6P09630 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC19.3■□□□□ 0.68
HOXC6P09630 UGT1A2P-201ENST00000454886 866 ntBASIC19.3■□□□□ 0.68
HOXC6P09630 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC19.3■□□□□ 0.68
HOXC6P09630 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 AL158211.3-201ENST00000607385 239 ntBASIC19.3■□□□□ 0.68
HOXC6P09630 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 AL035252.4-201ENST00000624174 288 ntBASIC19.3■□□□□ 0.68
HOXC6P09630 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC19.3■□□□□ 0.68
HOXC6P09630 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
HOXC6P09630 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.3■□□□□ 0.68
HOXC6P09630 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.3■□□□□ 0.68
HOXC6P09630 AC012569.1-201ENST00000591191 1524 ntBASIC19.3■□□□□ 0.68
HOXC6P09630 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC6P09630 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC6P09630 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC6P09630 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC6P09630 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.29■□□□□ 0.68
HOXC6P09630 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.29■□□□□ 0.68
HOXC6P09630 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.29■□□□□ 0.68
HOXC6P09630 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.29■□□□□ 0.68
HOXC6P09630 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC6P09630 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC6P09630 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC6P09630 AC005034.1-201ENST00000426657 489 ntBASIC19.29■□□□□ 0.68
HOXC6P09630 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC19.29■□□□□ 0.68
HOXC6P09630 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.29■□□□□ 0.68
HOXC6P09630 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC6P09630 SSH2-211ENST00000590153 570 ntTSL 4 BASIC19.29■□□□□ 0.68
HOXC6P09630 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
HOXC6P09630 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC6P09630 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC6P09630 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
HOXC6P09630 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC19.29■□□□□ 0.68
HOXC6P09630 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC6P09630 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC6P09630 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.29■□□□□ 0.68
HOXC6P09630 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.28■□□□□ 0.68
HOXC6P09630 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC6P09630 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC6P09630 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC6P09630 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
HOXC6P09630 NOC2LP1-202ENST00000452600 2235 ntBASIC19.28■□□□□ 0.68
HOXC6P09630 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC6P09630 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC6P09630 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC6P09630 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.28■□□□□ 0.68
HOXC6P09630 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC6P09630 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
HOXC6P09630 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC19.28■□□□□ 0.68
HOXC6P09630 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC19.28■□□□□ 0.68
HOXC6P09630 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC19.28■□□□□ 0.68
HOXC6P09630 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC6P09630 CCDC74BP1-201ENST00000508880 1123 ntBASIC19.28■□□□□ 0.68
HOXC6P09630 GATD1-206ENST00000526325 756 ntTSL 5 BASIC19.28■□□□□ 0.68
HOXC6P09630 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
HOXC6P09630 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC19.28■□□□□ 0.68
HOXC6P09630 AC005225.4-201ENST00000557330 545 ntBASIC19.28■□□□□ 0.68
HOXC6P09630 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC19.28■□□□□ 0.68
HOXC6P09630 AC012645.4-201ENST00000610691 1061 ntBASIC19.28■□□□□ 0.68
HOXC6P09630 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC6P09630 HFE2-206ENST00000634927 506 ntTSL 4 BASIC19.28■□□□□ 0.68
HOXC6P09630 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
HOXC6P09630 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
HOXC6P09630 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
HOXC6P09630 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms