Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HOXC4P09017 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC4P09017 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC4P09017 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.66■□□□□ 0.26
HOXC4P09017 CNN2P11-201ENST00000429351 262 ntBASIC16.66■□□□□ 0.26
HOXC4P09017 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.66■□□□□ 0.26
HOXC4P09017 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC4P09017 AC109635.5-201ENST00000533593 962 ntBASIC16.66■□□□□ 0.26
HOXC4P09017 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
HOXC4P09017 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
HOXC4P09017 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.66■□□□□ 0.26
HOXC4P09017 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.66■□□□□ 0.26
HOXC4P09017 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HOXC4P09017 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.66■□□□□ 0.26
HOXC4P09017 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
HOXC4P09017 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.66■□□□□ 0.26
HOXC4P09017 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.66■□□□□ 0.26
HOXC4P09017 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
HOXC4P09017 AL513210.1-201ENST00000629608 234 ntBASIC16.66■□□□□ 0.26
HOXC4P09017 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HOXC4P09017 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC4P09017 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC4P09017 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC4P09017 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC16.66■□□□□ 0.26
HOXC4P09017 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.66■□□□□ 0.26
HOXC4P09017 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HOXC4P09017 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.66■□□□□ 0.26
HOXC4P09017 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC4P09017 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.66■□□□□ 0.26
HOXC4P09017 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
HOXC4P09017 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC4P09017 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC4P09017 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC4P09017 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
HOXC4P09017 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC16.65■□□□□ 0.26
HOXC4P09017 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC4P09017 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.65■□□□□ 0.26
HOXC4P09017 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC4P09017 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC4P09017 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC4P09017 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
HOXC4P09017 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC4P09017 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC4P09017 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC4P09017 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC4P09017 ADH5P3-201ENST00000433842 1137 ntBASIC16.65■□□□□ 0.26
HOXC4P09017 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.65■□□□□ 0.26
HOXC4P09017 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.65■□□□□ 0.26
HOXC4P09017 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.65■□□□□ 0.26
HOXC4P09017 AC087641.1-201ENST00000557561 1021 ntBASIC16.65■□□□□ 0.26
HOXC4P09017 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.65■□□□□ 0.26
HOXC4P09017 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC4P09017 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
HOXC4P09017 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.65■□□□□ 0.26
HOXC4P09017 AL161645.1-201ENST00000622716 1255 ntBASIC16.65■□□□□ 0.26
HOXC4P09017 AC105339.1-204ENST00000636249 355 ntBASIC16.65■□□□□ 0.26
HOXC4P09017 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.65■□□□□ 0.26
HOXC4P09017 SLC22A20-204ENST00000530038 1673 ntBASIC16.65■□□□□ 0.26
HOXC4P09017 TUBB8P12-201ENST00000308911 1335 ntBASIC16.65■□□□□ 0.26
HOXC4P09017 TUBB7P-202ENST00000428444 1305 ntBASIC16.65■□□□□ 0.26
HOXC4P09017 TUBB8P7-204ENST00000567960 1332 ntBASIC16.65■□□□□ 0.26
HOXC4P09017 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
HOXC4P09017 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC4P09017 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC4P09017 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC4P09017 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.65■□□□□ 0.26
HOXC4P09017 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.26
HOXC4P09017 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.64■□□□□ 0.26
HOXC4P09017 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.64■□□□□ 0.26
HOXC4P09017 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.64■□□□□ 0.26
HOXC4P09017 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.64■□□□□ 0.25
HOXC4P09017 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC4P09017 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC4P09017 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.64■□□□□ 0.25
HOXC4P09017 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC4P09017 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC4P09017 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.64■□□□□ 0.25
HOXC4P09017 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
HOXC4P09017 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC4P09017 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC4P09017 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC4P09017 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC4P09017 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.64■□□□□ 0.25
HOXC4P09017 AC092474.2-201ENST00000424288 719 ntBASIC16.64■□□□□ 0.25
HOXC4P09017 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC4P09017 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC4P09017 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.64■□□□□ 0.25
HOXC4P09017 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.64■□□□□ 0.25
HOXC4P09017 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.64■□□□□ 0.25
HOXC4P09017 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC4P09017 MIR4492-201ENST00000581627 80 ntBASIC16.64■□□□□ 0.25
HOXC4P09017 AC099522.2-201ENST00000607001 744 ntBASIC16.64■□□□□ 0.25
HOXC4P09017 AL596442.2-201ENST00000610240 980 ntBASIC16.64■□□□□ 0.25
HOXC4P09017 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC4P09017 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC4P09017 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.64■□□□□ 0.25
HOXC4P09017 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.64■□□□□ 0.25
HOXC4P09017 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC4P09017 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.64■□□□□ 0.25
HOXC4P09017 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms