Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 CR383656.2-201ENST00000548656 2254 ntBASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 ZEB2-204ENST00000409487 5361 ntAPPRIS P2 TSL 5 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 C4orf33-201ENST00000281146 6170 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 PVT1-219ENST00000523427 938 ntTSL 3 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 MEF2D-204ENST00000464356 5598 ntAPPRIS ALT2 TSL 5 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 AC112777.1-201ENST00000540175 1423 ntBASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 CYP2T1P-202ENST00000641596 2535 ntBASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 HDAC2-205ENST00000519065 9874 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 AC018553.1-201ENST00000616682 1458 ntBASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC9.53□□□□□ -0.88
CHKB-CPT1BH3BT56 AC104417.2-201ENST00000562989 1793 ntBASIC9.52□□□□□ -0.88
CHKB-CPT1BH3BT56 LANCL1-205ENST00000443314 4781 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
CHKB-CPT1BH3BT56 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
CHKB-CPT1BH3BT56 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC9.52□□□□□ -0.88
CHKB-CPT1BH3BT56 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC9.52□□□□□ -0.88
CHKB-CPT1BH3BT56 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC9.52□□□□□ -0.88
CHKB-CPT1BH3BT56 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC9.52□□□□□ -0.88
CHKB-CPT1BH3BT56 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
CHKB-CPT1BH3BT56 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC9.52□□□□□ -0.88
CHKB-CPT1BH3BT56 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 CCDC92-208ENST00000545135 4883 ntAPPRIS P1 TSL 2 BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 RABGEF1-210ENST00000437078 4319 ntAPPRIS P1 TSL 5 BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 MYO1D-202ENST00000394649 5451 ntTSL 5 BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 AC091799.1-201ENST00000422823 811 ntBASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 AC126544.1-201ENST00000580842 1059 ntBASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 AC006116.8-202ENST00000587620 1550 ntBASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC9.52□□□□□ -0.89
CHKB-CPT1BH3BT56 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms