Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC19.26■□□□□ 0.67
COL4A3BPQ9Y5P4 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC19.26■□□□□ 0.67
COL4A3BPQ9Y5P4 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC19.26■□□□□ 0.67
COL4A3BPQ9Y5P4 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.26■□□□□ 0.67
COL4A3BPQ9Y5P4 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC19.26■□□□□ 0.67
COL4A3BPQ9Y5P4 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A3BPQ9Y5P4 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
COL4A3BPQ9Y5P4 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A3BPQ9Y5P4 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
COL4A3BPQ9Y5P4 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A3BPQ9Y5P4 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
COL4A3BPQ9Y5P4 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A3BPQ9Y5P4 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC19.26■□□□□ 0.67
COL4A3BPQ9Y5P4 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 AC116353.5-201ENST00000638148 1699 ntBASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 GID4-202ENST00000376345 1391 ntTSL 3 BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 MIR574-201ENST00000385209 96 ntBASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 AC145285.3-201ENST00000564603 959 ntBASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 AL356488.2-201ENST00000602755 427 ntBASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 AC004706.3-202ENST00000621574 984 ntBASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 AC117500.6-201ENST00000624871 588 ntBASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A3BPQ9Y5P4 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 ZNF259P1-201ENST00000407656 1365 ntBASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 AC073621.1-201ENST00000392730 636 ntBASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 PMS2P1-201ENST00000431037 1228 ntBASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 RNA5SP415-201ENST00000517246 115 ntBASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 MIR1199-201ENST00000621445 119 ntBASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 AC104109.2-201ENST00000602919 1418 ntBASIC19.24■□□□□ 0.67
COL4A3BPQ9Y5P4 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms