Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LHX3Q9UBR4 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.29■□□□□ 0.36
LHX3Q9UBR4 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.29■□□□□ 0.36
LHX3Q9UBR4 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LHX3Q9UBR4 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.29■□□□□ 0.36
LHX3Q9UBR4 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 PMS2P1-201ENST00000431037 1228 ntBASIC17.28■□□□□ 0.36
LHX3Q9UBR4 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.28■□□□□ 0.36
LHX3Q9UBR4 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 POLD2P1-201ENST00000511220 997 ntBASIC17.28■□□□□ 0.36
LHX3Q9UBR4 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 FAM197Y3-203ENST00000618346 717 ntBASIC17.28■□□□□ 0.36
LHX3Q9UBR4 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
LHX3Q9UBR4 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 MIR940-201ENST00000401276 94 ntBASIC17.27■□□□□ 0.36
LHX3Q9UBR4 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 AL591424.1-201ENST00000442569 1213 ntBASIC17.27■□□□□ 0.36
LHX3Q9UBR4 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 KRT18P2-201ENST00000447938 1258 ntBASIC17.27■□□□□ 0.36
LHX3Q9UBR4 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 REXO1L3P-201ENST00000622202 1288 ntBASIC17.27■□□□□ 0.36
LHX3Q9UBR4 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
LHX3Q9UBR4 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
LHX3Q9UBR4 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LHX3Q9UBR4 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
LHX3Q9UBR4 AC026471.1-201ENST00000564629 3026 ntBASIC17.27■□□□□ 0.35
LHX3Q9UBR4 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LHX3Q9UBR4 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LHX3Q9UBR4 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LHX3Q9UBR4 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.27■□□□□ 0.35
LHX3Q9UBR4 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
LHX3Q9UBR4 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
LHX3Q9UBR4 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
LHX3Q9UBR4 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
LHX3Q9UBR4 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LHX3Q9UBR4 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
LHX3Q9UBR4 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.26■□□□□ 0.35
LHX3Q9UBR4 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.26■□□□□ 0.35
LHX3Q9UBR4 KRT18P3-201ENST00000451602 1288 ntBASIC17.26■□□□□ 0.35
LHX3Q9UBR4 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms