Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS35Q96QK1 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS35Q96QK1 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
VPS35Q96QK1 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
VPS35Q96QK1 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
VPS35Q96QK1 PP12613-201ENST00000424958 2230 ntBASIC17.09■□□□□ 0.33
VPS35Q96QK1 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS35Q96QK1 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS35Q96QK1 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
VPS35Q96QK1 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS35Q96QK1 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS35Q96QK1 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS35Q96QK1 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS35Q96QK1 ELK2BP-201ENST00000415014 1224 ntBASIC17.09■□□□□ 0.33
VPS35Q96QK1 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.09■□□□□ 0.33
VPS35Q96QK1 AC136632.2-201ENST00000512891 861 ntBASIC17.09■□□□□ 0.33
VPS35Q96QK1 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.09■□□□□ 0.33
VPS35Q96QK1 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS35Q96QK1 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS35Q96QK1 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.09■□□□□ 0.33
VPS35Q96QK1 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
VPS35Q96QK1 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.09■□□□□ 0.33
VPS35Q96QK1 AL356488.2-201ENST00000602755 427 ntBASIC17.09■□□□□ 0.33
VPS35Q96QK1 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
VPS35Q96QK1 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS35Q96QK1 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
VPS35Q96QK1 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS35Q96QK1 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
VPS35Q96QK1 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
VPS35Q96QK1 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS35Q96QK1 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS35Q96QK1 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS35Q96QK1 AC093525.9-201ENST00000624961 1746 ntBASIC17.09■□□□□ 0.33
VPS35Q96QK1 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS35Q96QK1 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS35Q96QK1 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS35Q96QK1 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
VPS35Q96QK1 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS35Q96QK1 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS35Q96QK1 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
VPS35Q96QK1 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS35Q96QK1 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS35Q96QK1 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS35Q96QK1 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS35Q96QK1 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VPS35Q96QK1 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS35Q96QK1 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS35Q96QK1 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.08■□□□□ 0.33
VPS35Q96QK1 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.08■□□□□ 0.32
VPS35Q96QK1 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS35Q96QK1 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.08■□□□□ 0.32
VPS35Q96QK1 AC006504.4-201ENST00000592118 1568 ntBASIC17.08■□□□□ 0.32
VPS35Q96QK1 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VPS35Q96QK1 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS35Q96QK1 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VPS35Q96QK1 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VPS35Q96QK1 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS35Q96QK1 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.08■□□□□ 0.32
VPS35Q96QK1 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.08■□□□□ 0.32
VPS35Q96QK1 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.08■□□□□ 0.32
VPS35Q96QK1 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.08■□□□□ 0.32
VPS35Q96QK1 MIR1199-201ENST00000621445 119 ntBASIC17.08■□□□□ 0.32
VPS35Q96QK1 AL805961.1-202ENST00000641562 540 ntBASIC17.08■□□□□ 0.32
VPS35Q96QK1 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
VPS35Q96QK1 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS35Q96QK1 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS35Q96QK1 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS35Q96QK1 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.08■□□□□ 0.32
VPS35Q96QK1 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS35Q96QK1 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS35Q96QK1 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.08■□□□□ 0.32
VPS35Q96QK1 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VPS35Q96QK1 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS35Q96QK1 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS35Q96QK1 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS35Q96QK1 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS35Q96QK1 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS35Q96QK1 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS35Q96QK1 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS35Q96QK1 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS35Q96QK1 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS35Q96QK1 AP002414.3-201ENST00000589352 1468 ntBASIC17.07■□□□□ 0.32
VPS35Q96QK1 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS35Q96QK1 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
VPS35Q96QK1 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS35Q96QK1 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS35Q96QK1 AC243591.1-201ENST00000452967 1364 ntBASIC17.07■□□□□ 0.32
VPS35Q96QK1 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
VPS35Q96QK1 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS35Q96QK1 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS35Q96QK1 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS35Q96QK1 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS35Q96QK1 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS35Q96QK1 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
VPS35Q96QK1 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.07■□□□□ 0.32
VPS35Q96QK1 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS35Q96QK1 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.07■□□□□ 0.32
VPS35Q96QK1 AC116407.3-201ENST00000623905 1129 ntBASIC17.07■□□□□ 0.32
VPS35Q96QK1 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
VPS35Q96QK1 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms