Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 HLA-V-204ENST00000476601 1289 ntBASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM43Q96BQ3 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 HCG4-201ENST00000418983 998 ntBASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 RPS2P32-201ENST00000439199 892 ntBASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 STOM-203ENST00000538954 1257 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 AC140912.1-201ENST00000577171 1054 ntBASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 WT1-AS_2.1-201ENST00000613208 137 ntBASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM43Q96BQ3 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 SLC22A20-204ENST00000530038 1673 ntBASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 AC079776.1-201ENST00000401540 1152 ntBASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 AL353779.1-201ENST00000434793 351 ntBASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 AC245100.3-201ENST00000441281 285 ntBASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 INE1-201ENST00000456273 945 ntBASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 AL606495.2-201ENST00000605867 535 ntBASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 AC017083.2-201ENST00000608069 979 ntBASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 WIZP1-201ENST00000531444 2299 ntBASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM43Q96BQ3 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM43Q96BQ3 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM43Q96BQ3 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM43Q96BQ3 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
TRIM43Q96BQ3 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
TRIM43Q96BQ3 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
TRIM43Q96BQ3 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM43Q96BQ3 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM43Q96BQ3 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM43Q96BQ3 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM43Q96BQ3 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
TRIM43Q96BQ3 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms