Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RTF1Q92541 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RTF1Q92541 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC22.38■■□□□ 1.17
RTF1Q92541 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC22.38■■□□□ 1.17
RTF1Q92541 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC22.38■■□□□ 1.17
RTF1Q92541 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC22.38■■□□□ 1.17
RTF1Q92541 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC22.38■■□□□ 1.17
RTF1Q92541 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RTF1Q92541 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RTF1Q92541 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
RTF1Q92541 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
RTF1Q92541 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
RTF1Q92541 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC22.38■■□□□ 1.17
RTF1Q92541 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
RTF1Q92541 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
RTF1Q92541 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RTF1Q92541 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
RTF1Q92541 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
RTF1Q92541 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RTF1Q92541 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
RTF1Q92541 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
RTF1Q92541 AC068880.1-201ENST00000507289 2297 ntBASIC22.37■■□□□ 1.17
RTF1Q92541 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
RTF1Q92541 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RTF1Q92541 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC22.37■■□□□ 1.17
RTF1Q92541 RPS8P6-201ENST00000426177 609 ntBASIC22.37■■□□□ 1.17
RTF1Q92541 AL513480.1-201ENST00000451731 511 ntBASIC22.37■■□□□ 1.17
RTF1Q92541 AC004967.1-201ENST00000453589 447 ntBASIC22.37■■□□□ 1.17
RTF1Q92541 AC074386.1-202ENST00000463561 864 ntBASIC22.37■■□□□ 1.17
RTF1Q92541 ALG1L5P-201ENST00000482043 771 ntBASIC22.37■■□□□ 1.17
RTF1Q92541 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC22.37■■□□□ 1.17
RTF1Q92541 ACTL9-202ENST00000612068 1252 ntBASIC22.37■■□□□ 1.17
RTF1Q92541 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RTF1Q92541 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC22.37■■□□□ 1.17
RTF1Q92541 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC22.37■■□□□ 1.17
RTF1Q92541 AC134684.3-201ENST00000641758 218 ntBASIC22.37■■□□□ 1.17
RTF1Q92541 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
RTF1Q92541 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
RTF1Q92541 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RTF1Q92541 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RTF1Q92541 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
RTF1Q92541 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC22.37■■□□□ 1.17
RTF1Q92541 AC093525.9-201ENST00000624961 1746 ntBASIC22.37■■□□□ 1.17
RTF1Q92541 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC22.37■■□□□ 1.17
RTF1Q92541 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RTF1Q92541 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
RTF1Q92541 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RTF1Q92541 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC22.36■■□□□ 1.17
RTF1Q92541 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC22.36■■□□□ 1.17
RTF1Q92541 CYP51A1P2-201ENST00000419457 1499 ntBASIC22.36■■□□□ 1.17
RTF1Q92541 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
RTF1Q92541 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RTF1Q92541 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RTF1Q92541 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
RTF1Q92541 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
RTF1Q92541 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RTF1Q92541 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RTF1Q92541 AC211486.1-202ENST00000416371 468 ntBASIC22.36■■□□□ 1.17
RTF1Q92541 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC22.36■■□□□ 1.17
RTF1Q92541 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC22.36■■□□□ 1.17
RTF1Q92541 AC211476.1-201ENST00000503899 468 ntBASIC22.36■■□□□ 1.17
RTF1Q92541 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC22.36■■□□□ 1.17
RTF1Q92541 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RTF1Q92541 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC22.36■■□□□ 1.17
RTF1Q92541 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RTF1Q92541 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RTF1Q92541 AL078644.1-201ENST00000609881 752 ntBASIC22.36■■□□□ 1.17
RTF1Q92541 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RTF1Q92541 AC079781.4-201ENST00000641908 219 ntBASIC22.36■■□□□ 1.17
RTF1Q92541 FST-202ENST00000396947 2538 ntTSL 5 BASIC22.36■■□□□ 1.17
RTF1Q92541 EGFEM1P-202ENST00000431685 1563 ntBASIC22.36■■□□□ 1.17
RTF1Q92541 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RTF1Q92541 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC22.36■■□□□ 1.17
RTF1Q92541 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC22.36■■□□□ 1.17
RTF1Q92541 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
RTF1Q92541 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC22.36■■□□□ 1.17
RTF1Q92541 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
RTF1Q92541 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC22.36■■□□□ 1.17
RTF1Q92541 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
RTF1Q92541 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RTF1Q92541 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
RTF1Q92541 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
RTF1Q92541 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
RTF1Q92541 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC22.35■■□□□ 1.17
RTF1Q92541 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC22.35■■□□□ 1.17
RTF1Q92541 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
RTF1Q92541 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC22.35■■□□□ 1.17
RTF1Q92541 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
RTF1Q92541 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RTF1Q92541 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RTF1Q92541 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC22.35■■□□□ 1.17
RTF1Q92541 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
RTF1Q92541 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RTF1Q92541 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RTF1Q92541 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
RTF1Q92541 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC22.35■■□□□ 1.17
RTF1Q92541 HTR5BP-201ENST00000430851 1154 ntBASIC22.35■■□□□ 1.17
RTF1Q92541 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC22.35■■□□□ 1.17
RTF1Q92541 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC22.35■■□□□ 1.17
RTF1Q92541 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC22.35■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms