Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 AC068137.2-201ENST00000605408 478 ntBASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 AL596442.2-201ENST00000610240 980 ntBASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
UBE3BQ7Z3V4 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 MCC-208ENST00000514701 2855 ntTSL 2 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 REM2-202ENST00000536884 1331 ntTSL 2 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 URGCP-206ENST00000446958 365 ntTSL 2 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 CEND1P1-201ENST00000451006 455 ntBASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC21.35■■□□□ 1.01
UBE3BQ7Z3V4 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 LINC00896-202ENST00000609602 2128 ntBASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 RPL28-209ENST00000560055 670 ntTSL 3 BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 AC092902.6-201ENST00000641783 218 ntBASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 AC079781.4-201ENST00000641908 219 ntBASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
UBE3BQ7Z3V4 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
UBE3BQ7Z3V4 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
UBE3BQ7Z3V4 FZD10-202ENST00000539839 3282 ntBASIC21.33■■□□□ 1.01
UBE3BQ7Z3V4 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
UBE3BQ7Z3V4 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
UBE3BQ7Z3V4 HARS-203ENST00000431330 1774 ntTSL 2 BASIC21.33■■□□□ 1.01
UBE3BQ7Z3V4 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
UBE3BQ7Z3V4 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC21.33■■□□□ 1.01
UBE3BQ7Z3V4 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
UBE3BQ7Z3V4 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
UBE3BQ7Z3V4 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
UBE3BQ7Z3V4 FALEC-201ENST00000416894 566 ntTSL 3 BASIC21.33■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms