Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTR9Q6PD62 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTR9Q6PD62 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTR9Q6PD62 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
CTR9Q6PD62 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTR9Q6PD62 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CTR9Q6PD62 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CTR9Q6PD62 RPP21-221ENST00000428040 594 ntTSL 2 BASIC20.4■□□□□ 0.86
CTR9Q6PD62 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTR9Q6PD62 HNRNPRP1-201ENST00000453465 1695 ntBASIC20.4■□□□□ 0.86
CTR9Q6PD62 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CTR9Q6PD62 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC20.4■□□□□ 0.86
CTR9Q6PD62 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC20.4■□□□□ 0.86
CTR9Q6PD62 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTR9Q6PD62 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTR9Q6PD62 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CTR9Q6PD62 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CTR9Q6PD62 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.4■□□□□ 0.86
CTR9Q6PD62 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CTR9Q6PD62 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
CTR9Q6PD62 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
CTR9Q6PD62 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CTR9Q6PD62 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CTR9Q6PD62 AC116353.5-201ENST00000638148 1699 ntBASIC20.39■□□□□ 0.86
CTR9Q6PD62 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTR9Q6PD62 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC20.39■□□□□ 0.85
CTR9Q6PD62 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC20.39■□□□□ 0.85
CTR9Q6PD62 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTR9Q6PD62 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
CTR9Q6PD62 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC20.39■□□□□ 0.85
CTR9Q6PD62 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC20.39■□□□□ 0.85
CTR9Q6PD62 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC20.39■□□□□ 0.85
CTR9Q6PD62 SLC25A6P2-201ENST00000497974 877 ntBASIC20.39■□□□□ 0.85
CTR9Q6PD62 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTR9Q6PD62 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
CTR9Q6PD62 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.39■□□□□ 0.85
CTR9Q6PD62 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTR9Q6PD62 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTR9Q6PD62 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTR9Q6PD62 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
CTR9Q6PD62 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
CTR9Q6PD62 AC093525.9-201ENST00000624961 1746 ntBASIC20.39■□□□□ 0.85
CTR9Q6PD62 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTR9Q6PD62 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.38■□□□□ 0.85
CTR9Q6PD62 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.38■□□□□ 0.85
CTR9Q6PD62 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTR9Q6PD62 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTR9Q6PD62 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTR9Q6PD62 CROCCP2-202ENST00000412962 2773 ntBASIC20.38■□□□□ 0.85
CTR9Q6PD62 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTR9Q6PD62 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTR9Q6PD62 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC20.38■□□□□ 0.85
CTR9Q6PD62 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTR9Q6PD62 AC023274.1-201ENST00000418278 595 ntBASIC20.38■□□□□ 0.85
CTR9Q6PD62 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC20.38■□□□□ 0.85
CTR9Q6PD62 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CTR9Q6PD62 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC20.38■□□□□ 0.85
CTR9Q6PD62 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC20.38■□□□□ 0.85
CTR9Q6PD62 AC040169.1-201ENST00000565382 521 ntBASIC20.38■□□□□ 0.85
CTR9Q6PD62 AC018845.2-201ENST00000568326 409 ntBASIC20.38■□□□□ 0.85
CTR9Q6PD62 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC20.38■□□□□ 0.85
CTR9Q6PD62 CYB561-216ENST00000582297 897 ntTSL 3 BASIC20.38■□□□□ 0.85
CTR9Q6PD62 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTR9Q6PD62 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.38■□□□□ 0.85
CTR9Q6PD62 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC20.38■□□□□ 0.85
CTR9Q6PD62 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTR9Q6PD62 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTR9Q6PD62 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTR9Q6PD62 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC20.38■□□□□ 0.85
CTR9Q6PD62 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CTR9Q6PD62 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTR9Q6PD62 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC20.38■□□□□ 0.85
CTR9Q6PD62 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
CTR9Q6PD62 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CTR9Q6PD62 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CTR9Q6PD62 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CTR9Q6PD62 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC20.37■□□□□ 0.85
CTR9Q6PD62 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CTR9Q6PD62 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CTR9Q6PD62 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC20.37■□□□□ 0.85
CTR9Q6PD62 AC087163.2-201ENST00000457299 853 ntBASIC20.37■□□□□ 0.85
CTR9Q6PD62 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC20.37■□□□□ 0.85
CTR9Q6PD62 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC20.37■□□□□ 0.85
CTR9Q6PD62 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CTR9Q6PD62 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CTR9Q6PD62 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
CTR9Q6PD62 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
CTR9Q6PD62 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
CTR9Q6PD62 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
CTR9Q6PD62 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CTR9Q6PD62 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CTR9Q6PD62 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CTR9Q6PD62 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CTR9Q6PD62 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CTR9Q6PD62 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC20.37■□□□□ 0.85
CTR9Q6PD62 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTR9Q6PD62 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC20.36■□□□□ 0.85
CTR9Q6PD62 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTR9Q6PD62 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CTR9Q6PD62 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms