Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
HMGA1P17096 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGA1P17096 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGA1P17096 AC012569.1-201ENST00000591191 1524 ntBASIC17.73■□□□□ 0.43
HMGA1P17096 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.73■□□□□ 0.43
HMGA1P17096 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
HMGA1P17096 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGA1P17096 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
HMGA1P17096 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGA1P17096 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGA1P17096 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGA1P17096 AL671277.1-201ENST00000429656 993 ntBASIC17.73■□□□□ 0.43
HMGA1P17096 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.73■□□□□ 0.43
HMGA1P17096 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGA1P17096 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGA1P17096 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGA1P17096 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.73■□□□□ 0.43
HMGA1P17096 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.73■□□□□ 0.43
HMGA1P17096 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.73■□□□□ 0.43
HMGA1P17096 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGA1P17096 TOP3BP1-201ENST00000420768 1380 ntBASIC17.73■□□□□ 0.43
HMGA1P17096 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.73■□□□□ 0.43
HMGA1P17096 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGA1P17096 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGA1P17096 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGA1P17096 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGA1P17096 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
HMGA1P17096 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGA1P17096 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGA1P17096 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGA1P17096 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGA1P17096 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGA1P17096 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGA1P17096 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
HMGA1P17096 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGA1P17096 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
HMGA1P17096 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGA1P17096 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.72■□□□□ 0.43
HMGA1P17096 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGA1P17096 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGA1P17096 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.72■□□□□ 0.43
HMGA1P17096 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGA1P17096 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
HMGA1P17096 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGA1P17096 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.72■□□□□ 0.43
HMGA1P17096 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.72■□□□□ 0.43
HMGA1P17096 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
HMGA1P17096 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGA1P17096 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGA1P17096 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGA1P17096 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGA1P17096 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.72■□□□□ 0.43
HMGA1P17096 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.72■□□□□ 0.43
HMGA1P17096 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.72■□□□□ 0.43
HMGA1P17096 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
HMGA1P17096 KRT8P48-201ENST00000515599 1220 ntBASIC17.72■□□□□ 0.43
HMGA1P17096 RFPL4AP1-201ENST00000530883 850 ntBASIC17.72■□□□□ 0.43
HMGA1P17096 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.72■□□□□ 0.43
HMGA1P17096 AC026120.1-201ENST00000611536 926 ntBASIC17.72■□□□□ 0.43
HMGA1P17096 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
HMGA1P17096 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGA1P17096 AL133373.2-201ENST00000623187 2828 ntBASIC17.72■□□□□ 0.43
HMGA1P17096 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGA1P17096 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
HMGA1P17096 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGA1P17096 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGA1P17096 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGA1P17096 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.72■□□□□ 0.43
HMGA1P17096 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
HMGA1P17096 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGA1P17096 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
HMGA1P17096 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGA1P17096 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HMGA1P17096 CROCCP2-202ENST00000412962 2773 ntBASIC17.71■□□□□ 0.43
HMGA1P17096 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
HMGA1P17096 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
HMGA1P17096 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HMGA1P17096 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGA1P17096 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGA1P17096 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
HMGA1P17096 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGA1P17096 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
HMGA1P17096 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.71■□□□□ 0.43
HMGA1P17096 TSEN15P1-201ENST00000423257 515 ntBASIC17.71■□□□□ 0.43
HMGA1P17096 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.71■□□□□ 0.43
HMGA1P17096 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.71■□□□□ 0.43
HMGA1P17096 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
HMGA1P17096 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.71■□□□□ 0.43
HMGA1P17096 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.71■□□□□ 0.43
HMGA1P17096 AC093520.2-201ENST00000561830 333 ntBASIC17.71■□□□□ 0.43
HMGA1P17096 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HMGA1P17096 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HMGA1P17096 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGA1P17096 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGA1P17096 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGA1P17096 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGA1P17096 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HMGA1P17096 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
HMGA1P17096 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGA1P17096 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms