Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.6■□□□□ 0.41
VCANP13611 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCANP13611 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC17.6■□□□□ 0.41
VCANP13611 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCANP13611 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCANP13611 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCANP13611 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
VCANP13611 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VCANP13611 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCANP13611 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
VCANP13611 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.6■□□□□ 0.41
VCANP13611 AC109635.5-201ENST00000533593 962 ntBASIC17.6■□□□□ 0.41
VCANP13611 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.6■□□□□ 0.41
VCANP13611 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCANP13611 AC018529.1-201ENST00000613063 361 ntBASIC17.6■□□□□ 0.41
VCANP13611 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VCANP13611 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCANP13611 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VCANP13611 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VCANP13611 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
VCANP13611 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.59■□□□□ 0.41
VCANP13611 AC007389.4-201ENST00000454674 793 ntBASIC17.59■□□□□ 0.41
VCANP13611 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.59■□□□□ 0.41
VCANP13611 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VCANP13611 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
VCANP13611 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC17.59■□□□□ 0.41
VCANP13611 LINC00896-202ENST00000609602 2128 ntBASIC17.59■□□□□ 0.41
VCANP13611 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCANP13611 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCANP13611 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCANP13611 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCANP13611 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
VCANP13611 AL844908.2-201ENST00000609461 460 ntBASIC17.59■□□□□ 0.41
VCANP13611 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.59■□□□□ 0.41
VCANP13611 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VCANP13611 AC009336.1-201ENST00000608941 1553 ntBASIC17.58■□□□□ 0.41
VCANP13611 AP3S2-216ENST00000617003 1561 ntBASIC17.58■□□□□ 0.41
VCANP13611 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC17.58■□□□□ 0.41
VCANP13611 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.58■□□□□ 0.41
VCANP13611 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.58■□□□□ 0.41
VCANP13611 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VCANP13611 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.58■□□□□ 0.41
VCANP13611 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
VCANP13611 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.58■□□□□ 0.41
VCANP13611 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
VCANP13611 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
VCANP13611 HINT2P1-201ENST00000419438 481 ntBASIC17.58■□□□□ 0.41
VCANP13611 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC17.58■□□□□ 0.41
VCANP13611 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
VCANP13611 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.58■□□□□ 0.41
VCANP13611 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
VCANP13611 AC079328.1-201ENST00000560358 952 ntBASIC17.58■□□□□ 0.41
VCANP13611 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC17.58■□□□□ 0.41
VCANP13611 SPCS2P2-201ENST00000603270 608 ntBASIC17.58■□□□□ 0.41
VCANP13611 AL161645.1-201ENST00000622716 1255 ntBASIC17.58■□□□□ 0.41
VCANP13611 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC17.58■□□□□ 0.41
VCANP13611 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VCANP13611 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.58■□□□□ 0.4
VCANP13611 PHGDH-209ENST00000641074 1780 ntBASIC17.58■□□□□ 0.4
VCANP13611 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VCANP13611 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
VCANP13611 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.58■□□□□ 0.4
VCANP13611 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VCANP13611 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.58■□□□□ 0.4
VCANP13611 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VCANP13611 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VCANP13611 KRT8P13-201ENST00000463294 1010 ntBASIC17.58■□□□□ 0.4
VCANP13611 ZNF890P-202ENST00000530367 1156 ntBASIC17.58■□□□□ 0.4
VCANP13611 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
VCANP13611 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
VCANP13611 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
VCANP13611 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
VCANP13611 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
VCANP13611 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VCANP13611 AC087499.6-201ENST00000411576 835 ntBASIC17.57■□□□□ 0.4
VCANP13611 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VCANP13611 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC17.57■□□□□ 0.4
VCANP13611 AC007967.4-201ENST00000614700 386 ntBASIC17.57■□□□□ 0.4
VCANP13611 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
VCANP13611 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCANP13611 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.57■□□□□ 0.4
VCANP13611 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC17.57■□□□□ 0.4
VCANP13611 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCANP13611 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCANP13611 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.57■□□□□ 0.4
VCANP13611 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
VCANP13611 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
VCANP13611 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
VCANP13611 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCANP13611 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.57■□□□□ 0.4
VCANP13611 USP32P1-208ENST00000506594 1164 ntBASIC17.57■□□□□ 0.4
VCANP13611 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.57■□□□□ 0.4
VCANP13611 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
VCANP13611 AL009183.1-201ENST00000603760 355 ntBASIC17.57■□□□□ 0.4
VCANP13611 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VCANP13611 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCANP13611 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCANP13611 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
VCANP13611 AL590787.1-201ENST00000568856 1315 ntBASIC17.57■□□□□ 0.4
VCANP13611 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms