Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCNAP12004 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCNAP12004 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PCNAP12004 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCNAP12004 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
PCNAP12004 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCNAP12004 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCNAP12004 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCNAP12004 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCNAP12004 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PCNAP12004 KRT8P10-201ENST00000450021 1447 ntBASIC16.82■□□□□ 0.28
PCNAP12004 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.82■□□□□ 0.28
PCNAP12004 AC016396.2-201ENST00000562575 1417 ntBASIC16.82■□□□□ 0.28
PCNAP12004 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.82■□□□□ 0.28
PCNAP12004 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCNAP12004 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCNAP12004 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.82■□□□□ 0.28
PCNAP12004 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCNAP12004 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.82■□□□□ 0.28
PCNAP12004 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.82■□□□□ 0.28
PCNAP12004 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.82■□□□□ 0.28
PCNAP12004 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.82■□□□□ 0.28
PCNAP12004 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.82■□□□□ 0.28
PCNAP12004 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PCNAP12004 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCNAP12004 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.82■□□□□ 0.28
PCNAP12004 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.82■□□□□ 0.28
PCNAP12004 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
PCNAP12004 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.82■□□□□ 0.28
PCNAP12004 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCNAP12004 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCNAP12004 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.82■□□□□ 0.28
PCNAP12004 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PCNAP12004 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCNAP12004 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCNAP12004 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.82■□□□□ 0.28
PCNAP12004 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 AL121761.2-201ENST00000598007 1648 ntBASIC16.81■□□□□ 0.28
PCNAP12004 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
PCNAP12004 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 AL049757.1-201ENST00000616842 1596 ntBASIC16.81■□□□□ 0.28
PCNAP12004 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.81■□□□□ 0.28
PCNAP12004 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.81■□□□□ 0.28
PCNAP12004 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.81■□□□□ 0.28
PCNAP12004 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.81■□□□□ 0.28
PCNAP12004 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.81■□□□□ 0.28
PCNAP12004 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
PCNAP12004 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.81■□□□□ 0.28
PCNAP12004 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.81■□□□□ 0.28
PCNAP12004 AC011467.2-201ENST00000598425 242 ntBASIC16.81■□□□□ 0.28
PCNAP12004 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PCNAP12004 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.81■□□□□ 0.28
PCNAP12004 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCNAP12004 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
PCNAP12004 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.81■□□□□ 0.28
PCNAP12004 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCNAP12004 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.8■□□□□ 0.28
PCNAP12004 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCNAP12004 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.8■□□□□ 0.28
PCNAP12004 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
PCNAP12004 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.8■□□□□ 0.28
PCNAP12004 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PCNAP12004 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
PCNAP12004 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCNAP12004 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCNAP12004 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
PCNAP12004 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCNAP12004 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.8■□□□□ 0.28
PCNAP12004 IGHV3-47-201ENST00000425060 335 ntBASIC16.8■□□□□ 0.28
PCNAP12004 UPK3BP1-201ENST00000428678 509 ntBASIC16.8■□□□□ 0.28
PCNAP12004 ATP5G2P1-201ENST00000433580 426 ntBASIC16.8■□□□□ 0.28
PCNAP12004 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.8■□□□□ 0.28
PCNAP12004 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.8■□□□□ 0.28
PCNAP12004 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.8■□□□□ 0.28
PCNAP12004 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.8■□□□□ 0.28
PCNAP12004 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PCNAP12004 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.8■□□□□ 0.28
PCNAP12004 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
PCNAP12004 BNIP3P18-201ENST00000593976 575 ntBASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms