Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC10.58□□□□□ -0.72
APOBP04114 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC10.58□□□□□ -0.72
APOBP04114 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC10.58□□□□□ -0.72
APOBP04114 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC10.58□□□□□ -0.72
APOBP04114 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 AL109936.8-201ENST00000641772 604 ntBASIC10.58□□□□□ -0.72
APOBP04114 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC10.58□□□□□ -0.72
APOBP04114 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC10.58□□□□□ -0.72
APOBP04114 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC10.58□□□□□ -0.72
APOBP04114 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC10.58□□□□□ -0.72
APOBP04114 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
APOBP04114 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 AL355994.2-201ENST00000447882 704 ntBASIC10.58□□□□□ -0.72
APOBP04114 INE1-201ENST00000456273 945 ntBASIC10.58□□□□□ -0.72
APOBP04114 LITAF-210ENST00000571976 548 ntTSL 2 BASIC10.58□□□□□ -0.72
APOBP04114 LITAF-214ENST00000574703 486 ntTSL 2 BASIC10.58□□□□□ -0.72
APOBP04114 AL133215.2-201ENST00000609242 977 ntBASIC10.58□□□□□ -0.72
APOBP04114 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC10.58□□□□□ -0.72
APOBP04114 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC10.58□□□□□ -0.72
APOBP04114 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
APOBP04114 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC10.57□□□□□ -0.72
APOBP04114 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
APOBP04114 TUBB1P2-201ENST00000422712 1306 ntBASIC10.57□□□□□ -0.72
APOBP04114 TUBB1P1-201ENST00000503144 1300 ntBASIC10.57□□□□□ -0.72
APOBP04114 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC10.57□□□□□ -0.72
APOBP04114 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC10.57□□□□□ -0.72
APOBP04114 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
APOBP04114 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC10.57□□□□□ -0.72
APOBP04114 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC10.57□□□□□ -0.72
APOBP04114 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC10.57□□□□□ -0.72
APOBP04114 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
APOBP04114 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC10.57□□□□□ -0.72
APOBP04114 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
APOBP04114 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
APOBP04114 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC10.57□□□□□ -0.72
APOBP04114 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
APOBP04114 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
APOBP04114 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
APOBP04114 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC10.57□□□□□ -0.72
APOBP04114 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
APOBP04114 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC10.57□□□□□ -0.72
APOBP04114 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
APOBP04114 RPL37AP1-201ENST00000412502 279 ntBASIC10.57□□□□□ -0.72
APOBP04114 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC10.57□□□□□ -0.72
APOBP04114 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC10.57□□□□□ -0.72
APOBP04114 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC10.57□□□□□ -0.72
APOBP04114 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC10.57□□□□□ -0.72
APOBP04114 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC10.57□□□□□ -0.72
APOBP04114 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC10.57□□□□□ -0.72
APOBP04114 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
APOBP04114 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
APOBP04114 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
APOBP04114 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
APOBP04114 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
APOBP04114 AL139327.4-201ENST00000612362 153 ntBASIC10.57□□□□□ -0.72
APOBP04114 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
APOBP04114 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC10.57□□□□□ -0.72
APOBP04114 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
APOBP04114 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC10.57□□□□□ -0.72
APOBP04114 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
APOBP04114 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC10.57□□□□□ -0.72
APOBP04114 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC10.57□□□□□ -0.72
APOBP04114 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC10.57□□□□□ -0.72
APOBP04114 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC10.57□□□□□ -0.72
APOBP04114 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
APOBP04114 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC10.57□□□□□ -0.72
APOBP04114 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
APOBP04114 LINC00895-201ENST00000629028 1637 ntBASIC10.56□□□□□ -0.72
APOBP04114 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC10.56□□□□□ -0.72
APOBP04114 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC10.56□□□□□ -0.72
APOBP04114 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC10.56□□□□□ -0.72
APOBP04114 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
APOBP04114 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC10.56□□□□□ -0.72
APOBP04114 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC10.56□□□□□ -0.72
APOBP04114 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC10.56□□□□□ -0.72
APOBP04114 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC10.56□□□□□ -0.72
APOBP04114 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
APOBP04114 CETN4P-206ENST00000642099 2168 ntBASIC10.56□□□□□ -0.72
APOBP04114 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
APOBP04114 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC10.56□□□□□ -0.72
APOBP04114 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC10.56□□□□□ -0.72
APOBP04114 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC10.56□□□□□ -0.72
APOBP04114 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC10.56□□□□□ -0.72
APOBP04114 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC10.56□□□□□ -0.72
APOBP04114 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC10.56□□□□□ -0.72
APOBP04114 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
APOBP04114 STOM-203ENST00000538954 1257 ntTSL 5 BASIC10.56□□□□□ -0.72
APOBP04114 AL512343.1-201ENST00000605837 169 ntBASIC10.56□□□□□ -0.72
APOBP04114 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
APOBP04114 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
APOBP04114 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC10.56□□□□□ -0.72
APOBP04114 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC10.56□□□□□ -0.72
APOBP04114 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC10.56□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms