Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
COL3A1P02461 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC22.51■■□□□ 1.19
COL3A1P02461 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC22.51■■□□□ 1.19
COL3A1P02461 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC22.51■■□□□ 1.19
COL3A1P02461 AC013467.2-201ENST00000605472 835 ntBASIC22.51■■□□□ 1.19
COL3A1P02461 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC22.51■■□□□ 1.19
COL3A1P02461 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL3A1P02461 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
COL3A1P02461 TUBB8P12-201ENST00000308911 1335 ntBASIC22.51■■□□□ 1.19
COL3A1P02461 TUBB7P-202ENST00000428444 1305 ntBASIC22.51■■□□□ 1.19
COL3A1P02461 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC22.51■■□□□ 1.19
COL3A1P02461 TUBB8P7-204ENST00000567960 1332 ntBASIC22.51■■□□□ 1.19
COL3A1P02461 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL3A1P02461 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
COL3A1P02461 MCC-208ENST00000514701 2855 ntTSL 2 BASIC22.51■■□□□ 1.19
COL3A1P02461 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL3A1P02461 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
COL3A1P02461 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
COL3A1P02461 AC012569.1-201ENST00000591191 1524 ntBASIC22.5■■□□□ 1.19
COL3A1P02461 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
COL3A1P02461 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC22.5■■□□□ 1.19
COL3A1P02461 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL3A1P02461 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
COL3A1P02461 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL3A1P02461 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC22.5■■□□□ 1.19
COL3A1P02461 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC22.5■■□□□ 1.19
COL3A1P02461 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
COL3A1P02461 AC211486.1-202ENST00000416371 468 ntBASIC22.5■■□□□ 1.19
COL3A1P02461 URGCP-206ENST00000446958 365 ntTSL 2 BASIC22.5■■□□□ 1.19
COL3A1P02461 AC211476.1-201ENST00000503899 468 ntBASIC22.5■■□□□ 1.19
COL3A1P02461 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC22.5■■□□□ 1.19
COL3A1P02461 AC087641.1-201ENST00000557561 1021 ntBASIC22.5■■□□□ 1.19
COL3A1P02461 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC22.5■■□□□ 1.19
COL3A1P02461 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC22.5■■□□□ 1.19
COL3A1P02461 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
COL3A1P02461 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL3A1P02461 AL021920.2-201ENST00000624828 1351 ntBASIC22.5■■□□□ 1.19
COL3A1P02461 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC22.5■■□□□ 1.19
COL3A1P02461 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
COL3A1P02461 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL3A1P02461 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL3A1P02461 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
COL3A1P02461 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL3A1P02461 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC22.49■■□□□ 1.19
COL3A1P02461 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL3A1P02461 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC22.49■■□□□ 1.19
COL3A1P02461 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC22.49■■□□□ 1.19
COL3A1P02461 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
COL3A1P02461 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC22.49■■□□□ 1.19
COL3A1P02461 CD7-202ENST00000578509 925 ntTSL 3 BASIC22.49■■□□□ 1.19
COL3A1P02461 AC022145.2-201ENST00000598203 171 ntBASIC22.49■■□□□ 1.19
COL3A1P02461 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
COL3A1P02461 AL513210.1-201ENST00000629608 234 ntBASIC22.49■■□□□ 1.19
COL3A1P02461 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL3A1P02461 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC22.49■■□□□ 1.19
COL3A1P02461 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL3A1P02461 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC22.49■■□□□ 1.19
COL3A1P02461 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL3A1P02461 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
COL3A1P02461 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL3A1P02461 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
COL3A1P02461 PCDHB17P-201ENST00000539533 2393 ntBASIC22.49■■□□□ 1.19
COL3A1P02461 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL3A1P02461 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL3A1P02461 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL3A1P02461 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC22.48■■□□□ 1.19
COL3A1P02461 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC22.48■■□□□ 1.19
COL3A1P02461 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL3A1P02461 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL3A1P02461 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL3A1P02461 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL3A1P02461 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL3A1P02461 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL3A1P02461 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL3A1P02461 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
COL3A1P02461 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL3A1P02461 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC22.48■■□□□ 1.19
COL3A1P02461 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC22.48■■□□□ 1.19
COL3A1P02461 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
COL3A1P02461 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL3A1P02461 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC22.48■■□□□ 1.19
COL3A1P02461 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC22.48■■□□□ 1.19
COL3A1P02461 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC22.48■■□□□ 1.19
COL3A1P02461 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL3A1P02461 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL3A1P02461 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL3A1P02461 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
COL3A1P02461 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL3A1P02461 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC22.48■■□□□ 1.19
COL3A1P02461 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
COL3A1P02461 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL3A1P02461 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL3A1P02461 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC22.47■■□□□ 1.19
COL3A1P02461 AC112191.1-201ENST00000523689 701 ntBASIC22.47■■□□□ 1.19
COL3A1P02461 CFL1-202ENST00000524553 860 ntTSL 2 BASIC22.47■■□□□ 1.19
COL3A1P02461 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
COL3A1P02461 MIR3687-2-201ENST00000577708 61 ntBASIC22.47■■□□□ 1.19
COL3A1P02461 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC22.47■■□□□ 1.19
COL3A1P02461 MIR3687-1-201ENST00000614492 61 ntBASIC22.47■■□□□ 1.19
COL3A1P02461 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC22.47■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms