Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MBD4O95243 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
MBD4O95243 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC20.48■□□□□ 0.87
MBD4O95243 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MBD4O95243 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MBD4O95243 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
MBD4O95243 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
MBD4O95243 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
MBD4O95243 IMP4-203ENST00000409935 958 ntTSL 5 BASIC20.48■□□□□ 0.87
MBD4O95243 ATP6V0CP3-201ENST00000417255 467 ntBASIC20.48■□□□□ 0.87
MBD4O95243 MAL2-202ENST00000531508 892 ntTSL 3 BASIC20.48■□□□□ 0.87
MBD4O95243 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC20.48■□□□□ 0.87
MBD4O95243 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
MBD4O95243 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
MBD4O95243 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
MBD4O95243 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC20.48■□□□□ 0.87
MBD4O95243 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MBD4O95243 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MBD4O95243 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MBD4O95243 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MBD4O95243 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
MBD4O95243 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MBD4O95243 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MBD4O95243 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MBD4O95243 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
MBD4O95243 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
MBD4O95243 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
MBD4O95243 AC040169.1-201ENST00000565382 521 ntBASIC20.47■□□□□ 0.87
MBD4O95243 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC20.47■□□□□ 0.87
MBD4O95243 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC20.47■□□□□ 0.87
MBD4O95243 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC20.47■□□□□ 0.87
MBD4O95243 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC20.47■□□□□ 0.87
MBD4O95243 AC092865.6-201ENST00000642101 219 ntBASIC20.47■□□□□ 0.87
MBD4O95243 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
MBD4O95243 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
MBD4O95243 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
MBD4O95243 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC20.47■□□□□ 0.87
MBD4O95243 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
MBD4O95243 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC20.47■□□□□ 0.87
MBD4O95243 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MBD4O95243 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MBD4O95243 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MBD4O95243 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
MBD4O95243 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MBD4O95243 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.46■□□□□ 0.87
MBD4O95243 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.46■□□□□ 0.87
MBD4O95243 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
MBD4O95243 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
MBD4O95243 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MBD4O95243 CYP51A1P2-201ENST00000419457 1499 ntBASIC20.46■□□□□ 0.87
MBD4O95243 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MBD4O95243 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC20.46■□□□□ 0.87
MBD4O95243 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MBD4O95243 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
MBD4O95243 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MBD4O95243 BX842568.4-201ENST00000421222 227 ntBASIC20.46■□□□□ 0.87
MBD4O95243 RPP21-221ENST00000428040 594 ntTSL 2 BASIC20.46■□□□□ 0.87
MBD4O95243 COX10-202ENST00000429152 875 ntTSL 2 BASIC20.46■□□□□ 0.87
MBD4O95243 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MBD4O95243 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MBD4O95243 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC20.46■□□□□ 0.87
MBD4O95243 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
MBD4O95243 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC20.46■□□□□ 0.87
MBD4O95243 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC20.46■□□□□ 0.87
MBD4O95243 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC20.46■□□□□ 0.87
MBD4O95243 AL513190.1-201ENST00000621254 727 ntBASIC20.46■□□□□ 0.87
MBD4O95243 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
MBD4O95243 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MBD4O95243 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MBD4O95243 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MBD4O95243 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MBD4O95243 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MBD4O95243 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
MBD4O95243 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MBD4O95243 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
MBD4O95243 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC20.45■□□□□ 0.86
MBD4O95243 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MBD4O95243 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
MBD4O95243 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MBD4O95243 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC20.45■□□□□ 0.86
MBD4O95243 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MBD4O95243 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
MBD4O95243 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
MBD4O95243 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC20.45■□□□□ 0.86
MBD4O95243 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC20.45■□□□□ 0.86
MBD4O95243 AC107918.2-201ENST00000530817 355 ntBASIC20.45■□□□□ 0.86
MBD4O95243 AC092865.5-201ENST00000545435 363 ntBASIC20.45■□□□□ 0.86
MBD4O95243 CD63-210ENST00000550776 870 ntTSL 5 BASIC20.45■□□□□ 0.86
MBD4O95243 AC096734.2-201ENST00000562054 433 ntBASIC20.45■□□□□ 0.86
MBD4O95243 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC20.45■□□□□ 0.86
MBD4O95243 ACTL9-202ENST00000612068 1252 ntBASIC20.45■□□□□ 0.86
MBD4O95243 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC20.45■□□□□ 0.86
MBD4O95243 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
MBD4O95243 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MBD4O95243 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MBD4O95243 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MBD4O95243 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
MBD4O95243 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
MBD4O95243 RHBDF1P1-201ENST00000427504 1941 ntBASIC20.45■□□□□ 0.86
MBD4O95243 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms