Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB3O75112 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB3O75112 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LDB3O75112 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB3O75112 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
LDB3O75112 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.21■□□□□ 0.19
LDB3O75112 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LDB3O75112 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
LDB3O75112 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
LDB3O75112 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
LDB3O75112 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB3O75112 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
LDB3O75112 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.21■□□□□ 0.19
LDB3O75112 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
LDB3O75112 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.21■□□□□ 0.19
LDB3O75112 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LDB3O75112 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.21■□□□□ 0.19
LDB3O75112 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.21■□□□□ 0.19
LDB3O75112 LAGE3P1-201ENST00000425356 484 ntBASIC16.21■□□□□ 0.19
LDB3O75112 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.21■□□□□ 0.19
LDB3O75112 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LDB3O75112 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.21■□□□□ 0.19
LDB3O75112 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.21■□□□□ 0.19
LDB3O75112 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.21■□□□□ 0.19
LDB3O75112 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.21■□□□□ 0.19
LDB3O75112 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.21■□□□□ 0.19
LDB3O75112 SLC25A6P4-201ENST00000586535 553 ntBASIC16.21■□□□□ 0.19
LDB3O75112 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.21■□□□□ 0.19
LDB3O75112 AL773604.1-201ENST00000617417 272 ntBASIC16.21■□□□□ 0.19
LDB3O75112 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
LDB3O75112 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB3O75112 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.21■□□□□ 0.19
LDB3O75112 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.21■□□□□ 0.19
LDB3O75112 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB3O75112 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB3O75112 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LDB3O75112 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB3O75112 AP001094.4-201ENST00000579008 2176 ntBASIC16.21■□□□□ 0.19
LDB3O75112 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.21■□□□□ 0.19
LDB3O75112 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
LDB3O75112 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDB3O75112 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.21■□□□□ 0.18
LDB3O75112 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.21■□□□□ 0.18
LDB3O75112 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
LDB3O75112 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
LDB3O75112 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.2■□□□□ 0.18
LDB3O75112 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.2■□□□□ 0.18
LDB3O75112 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
LDB3O75112 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.2■□□□□ 0.18
LDB3O75112 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.2■□□□□ 0.18
LDB3O75112 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.2■□□□□ 0.18
LDB3O75112 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
LDB3O75112 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.2■□□□□ 0.18
LDB3O75112 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC16.2■□□□□ 0.18
LDB3O75112 AL353135.1-201ENST00000606729 504 ntBASIC16.2■□□□□ 0.18
LDB3O75112 AL139424.1-201ENST00000607572 797 ntBASIC16.2■□□□□ 0.18
LDB3O75112 AC004706.3-202ENST00000621574 984 ntBASIC16.2■□□□□ 0.18
LDB3O75112 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.2■□□□□ 0.18
LDB3O75112 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
LDB3O75112 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.2■□□□□ 0.18
LDB3O75112 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDB3O75112 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
LDB3O75112 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
LDB3O75112 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.19■□□□□ 0.18
LDB3O75112 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.19■□□□□ 0.18
LDB3O75112 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.19■□□□□ 0.18
LDB3O75112 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDB3O75112 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LDB3O75112 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDB3O75112 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDB3O75112 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
LDB3O75112 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
LDB3O75112 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDB3O75112 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDB3O75112 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDB3O75112 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.19■□□□□ 0.18
LDB3O75112 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.19■□□□□ 0.18
LDB3O75112 EGFEM1P-202ENST00000431685 1563 ntBASIC16.19■□□□□ 0.18
LDB3O75112 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms