Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 CD177P1-201ENST00000606252 935 ntBASIC12.64□□□□□ -0.39
SMKR1H3BMG3 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
SMKR1H3BMG3 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 AC008687.5-201ENST00000593746 558 ntBASIC12.63□□□□□ -0.39
SMKR1H3BMG3 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 AL139327.4-201ENST00000612362 153 ntBASIC12.63□□□□□ -0.39
SMKR1H3BMG3 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
SMKR1H3BMG3 SRI-203ENST00000419179 1307 ntTSL 2 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SMKR1H3BMG3 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms