Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AL118558.3-201ENST00000607414 1079 ntBASIC13.17□□□□□ -0.3
COL6A5A8TX70 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL6A5A8TX70 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC13.17□□□□□ -0.3
COL6A5A8TX70 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL6A5A8TX70 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC13.17□□□□□ -0.3
COL6A5A8TX70 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL6A5A8TX70 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL6A5A8TX70 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC13.17□□□□□ -0.3
COL6A5A8TX70 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC13.17□□□□□ -0.3
COL6A5A8TX70 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL6A5A8TX70 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL6A5A8TX70 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL6A5A8TX70 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL6A5A8TX70 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC13.17□□□□□ -0.3
COL6A5A8TX70 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC13.17□□□□□ -0.3
COL6A5A8TX70 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL6A5A8TX70 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC13.17□□□□□ -0.3
COL6A5A8TX70 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC13.17□□□□□ -0.3
COL6A5A8TX70 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL6A5A8TX70 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC13.17□□□□□ -0.3
COL6A5A8TX70 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC13.17□□□□□ -0.3
COL6A5A8TX70 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL6A5A8TX70 AFG3L1P-217ENST00000557444 2447 ntBASIC13.17□□□□□ -0.3
COL6A5A8TX70 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL6A5A8TX70 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL6A5A8TX70 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL6A5A8TX70 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL6A5A8TX70 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL6A5A8TX70 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL6A5A8TX70 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL6A5A8TX70 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL6A5A8TX70 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL6A5A8TX70 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL6A5A8TX70 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 LBH-202ENST00000401506 485 ntTSL 3 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 MEP1AP4-201ENST00000423244 1087 ntBASIC13.16□□□□□ -0.3
COL6A5A8TX70 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL6A5A8TX70 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 AC108725.1-201ENST00000495472 409 ntBASIC13.16□□□□□ -0.3
COL6A5A8TX70 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL6A5A8TX70 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 DERL2-202ENST00000570848 657 ntTSL 5 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL6A5A8TX70 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL6A5A8TX70 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL6A5A8TX70 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL6A5A8TX70 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL6A5A8TX70 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL6A5A8TX70 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL6A5A8TX70 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL6A5A8TX70 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL6A5A8TX70 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 AC044860.1-202ENST00000559481 777 ntBASIC13.16□□□□□ -0.3
COL6A5A8TX70 AC105129.2-201ENST00000559536 390 ntBASIC13.16□□□□□ -0.3
COL6A5A8TX70 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL6A5A8TX70 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL6A5A8TX70 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL6A5A8TX70 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL6A5A8TX70 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL6A5A8TX70 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC13.16□□□□□ -0.3
COL6A5A8TX70 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL6A5A8TX70 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 GGCT-203ENST00000409144 836 ntTSL 2 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 MTND6P24-201ENST00000440466 518 ntBASIC13.15□□□□□ -0.3
COL6A5A8TX70 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL6A5A8TX70 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL6A5A8TX70 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 MIR3909-201ENST00000579518 119 ntBASIC13.15□□□□□ -0.3
COL6A5A8TX70 WFDC1-204ENST00000613603 549 ntBASIC13.15□□□□□ -0.3
COL6A5A8TX70 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL6A5A8TX70 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL6A5A8TX70 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL6A5A8TX70 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL6A5A8TX70 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC13.15□□□□□ -0.3
COL6A5A8TX70 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms