Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 AC010507.1-201ENST00000633895 436 ntBASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 GNE-204ENST00000539208 2190 ntTSL 2 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 FER1L4-210ENST00000615531 5998 ntBASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLCF1Q9UBD9 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 RPSAP43-201ENST00000402237 625 ntBASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 AC096734.2-201ENST00000562054 433 ntBASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 MTDHP5-201ENST00000598980 586 ntBASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLCF1Q9UBD9 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 AR-207ENST00000612010 3896 ntTSL 5 BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 MCCD1P2-201ENST00000423228 335 ntBASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 AC087163.2-201ENST00000457299 853 ntBASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 AC092865.6-201ENST00000642101 219 ntBASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 GNAS-203ENST00000306120 1878 ntBASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.29■□□□□ 0.04
CLCF1Q9UBD9 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLCF1Q9UBD9 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms