Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 AC019129.2-201ENST00000609837 1235 ntBASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 EGFEM1P-202ENST00000431685 1563 ntBASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 AL136379.1-201ENST00000623471 2642 ntBASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 AL353692.3-201ENST00000407031 1396 ntBASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 AC092171.3-201ENST00000610122 2651 ntBASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28BQ9BUN5 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.79■□□□□ 0.28
CCDC28BQ9BUN5 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms