Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC42Q96M95 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC42Q96M95 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC42Q96M95 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CCDC42Q96M95 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC42Q96M95 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CCDC42Q96M95 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC42Q96M95 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC42Q96M95 AL049757.1-201ENST00000616842 1596 ntBASIC18.63■□□□□ 0.57
CCDC42Q96M95 AC092171.3-201ENST00000610122 2651 ntBASIC18.63■□□□□ 0.57
CCDC42Q96M95 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC42Q96M95 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CCDC42Q96M95 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC42Q96M95 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC42Q96M95 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC42Q96M95 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
CCDC42Q96M95 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CCDC42Q96M95 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC18.62■□□□□ 0.57
CCDC42Q96M95 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC42Q96M95 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC42Q96M95 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC42Q96M95 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC42Q96M95 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC42Q96M95 AC122714.2-201ENST00000502787 707 ntBASIC18.62■□□□□ 0.57
CCDC42Q96M95 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.62■□□□□ 0.57
CCDC42Q96M95 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC42Q96M95 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC42Q96M95 AC125634.1-201ENST00000438758 1403 ntBASIC18.62■□□□□ 0.57
CCDC42Q96M95 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC42Q96M95 EGFEM1P-202ENST00000431685 1563 ntBASIC18.62■□□□□ 0.57
CCDC42Q96M95 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CCDC42Q96M95 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CCDC42Q96M95 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CCDC42Q96M95 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC42Q96M95 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC42Q96M95 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC42Q96M95 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC42Q96M95 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC42Q96M95 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC42Q96M95 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC42Q96M95 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
CCDC42Q96M95 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CCDC42Q96M95 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC42Q96M95 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.61■□□□□ 0.57
CCDC42Q96M95 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC42Q96M95 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
CCDC42Q96M95 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC42Q96M95 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
CCDC42Q96M95 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC42Q96M95 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC42Q96M95 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC42Q96M95 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC42Q96M95 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC42Q96M95 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CCDC42Q96M95 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC42Q96M95 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC42Q96M95 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CCDC42Q96M95 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC42Q96M95 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
CCDC42Q96M95 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
CCDC42Q96M95 AC103564.2-201ENST00000432853 1299 ntBASIC18.61■□□□□ 0.57
CCDC42Q96M95 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC42Q96M95 AC012306.2-201ENST00000609350 630 ntBASIC18.61■□□□□ 0.57
CCDC42Q96M95 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC42Q96M95 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CCDC42Q96M95 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC42Q96M95 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC42Q96M95 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC42Q96M95 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC42Q96M95 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
CCDC42Q96M95 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC42Q96M95 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC42Q96M95 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC42Q96M95 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC42Q96M95 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC42Q96M95 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC42Q96M95 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
CCDC42Q96M95 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC42Q96M95 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC42Q96M95 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC42Q96M95 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC42Q96M95 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC42Q96M95 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC42Q96M95 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CCDC42Q96M95 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC42Q96M95 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC42Q96M95 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC42Q96M95 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC42Q96M95 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.6■□□□□ 0.57
CCDC42Q96M95 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC42Q96M95 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC42Q96M95 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC42Q96M95 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC42Q96M95 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC42Q96M95 AC097493.4-201ENST00000641197 219 ntBASIC18.6■□□□□ 0.57
CCDC42Q96M95 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC42Q96M95 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC42Q96M95 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC42Q96M95 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC42Q96M95 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms