Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLIP3Q96DZ5 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 AC105339.3-201ENST00000560043 636 ntBASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 AC012640.2-201ENST00000561606 901 ntBASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 C8orf49-201ENST00000525043 1968 ntBASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 AL662844.4-201ENST00000606367 2838 ntBASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.69■□□□□ 0.26
CLIP3Q96DZ5 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 SPDYE21P-201ENST00000413323 827 ntBASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 AL020989.1-201ENST00000422979 469 ntBASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 LAGE3P1-201ENST00000425356 484 ntBASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 AC098831.1-202ENST00000438821 336 ntBASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 TERC-201ENST00000602385 541 ntBASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 AL671883.3-201ENST00000603274 991 ntBASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 AC023511.2-201ENST00000618803 211 ntBASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 AC104109.2-201ENST00000602919 1418 ntBASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.68■□□□□ 0.26
CLIP3Q96DZ5 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.67■□□□□ 0.26
CLIP3Q96DZ5 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms