Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 LINC01451-201ENST00000623792 534 ntBASIC17.77■□□□□ 0.44
NPAS3Q8IXF0 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.77■□□□□ 0.44
NPAS3Q8IXF0 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
NPAS3Q8IXF0 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.77■□□□□ 0.44
NPAS3Q8IXF0 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.77■□□□□ 0.44
NPAS3Q8IXF0 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
NPAS3Q8IXF0 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.77■□□□□ 0.44
NPAS3Q8IXF0 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
NPAS3Q8IXF0 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
NPAS3Q8IXF0 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
NPAS3Q8IXF0 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
NPAS3Q8IXF0 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
NPAS3Q8IXF0 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
NPAS3Q8IXF0 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.77■□□□□ 0.43
NPAS3Q8IXF0 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
NPAS3Q8IXF0 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.77■□□□□ 0.43
NPAS3Q8IXF0 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
NPAS3Q8IXF0 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.77■□□□□ 0.43
NPAS3Q8IXF0 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 AC005237.2-201ENST00000434368 219 ntBASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 Z92544.3-201ENST00000624747 417 ntBASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NPAS3Q8IXF0 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 AC079140.1-201ENST00000508039 487 ntBASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 AL390955.2-201ENST00000603032 514 ntBASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.75■□□□□ 0.43
NPAS3Q8IXF0 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NPAS3Q8IXF0 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms