Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 PRORSD1P-202ENST00000563365 2154 ntBASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SYNE3Q6ZMZ3 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 AC097637.2-201ENST00000624096 1997 ntBASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 KRT126P-201ENST00000549467 1181 ntBASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 AC004817.3-201ENST00000602957 2129 ntBASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE3Q6ZMZ3 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 AC116353.5-201ENST00000638148 1699 ntBASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 HIST2H3DP1-201ENST00000401004 416 ntBASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 PP7080-204ENST00000510714 601 ntTSL 3 BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 AC080080.1-201ENST00000625121 2420 ntBASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 AC093525.9-201ENST00000624961 1746 ntBASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.29■□□□□ 0.84
SYNE3Q6ZMZ3 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 AP001094.4-201ENST00000579008 2176 ntBASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 AC004870.1-201ENST00000315132 882 ntBASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 EMBP1-201ENST00000458200 901 ntBASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 MSRA-206ENST00000521209 814 ntTSL 3 BASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 CYB561-217ENST00000582997 877 ntTSL 5 BASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.28■□□□□ 0.84
SYNE3Q6ZMZ3 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms