Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 AL591684.3-201ENST00000605187 298 ntBASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 AC092068.3-201ENST00000587894 2016 ntBASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 AGGF1P2-201ENST00000426656 2106 ntBASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 AC105020.1-201ENST00000435356 2205 ntBASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 NUS1P1-201ENST00000446295 882 ntBASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 FOSL1P1-201ENST00000511041 816 ntBASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 AP001269.4-201ENST00000609611 512 ntBASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 AC004817.3-201ENST00000602957 2129 ntBASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF549Q6P9A3 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 AL020989.1-201ENST00000422979 469 ntBASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 KRT16P4-201ENST00000453883 522 ntBASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 AC132008.2-207ENST00000454517 770 ntBASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 AC073592.4-201ENST00000623827 446 ntBASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 SIGLEC16-201ENST00000599858 1437 ntBASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
ZNF549Q6P9A3 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms