Protein–RNA interactions for Protein: Q496Y0

LONRF3, LON peptidase N-terminal domain and RING finger protein 3, humanhuman

Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LONRF3Q496Y0 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LONRF3Q496Y0 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 AC105020.1-201ENST00000435356 2205 ntBASIC19.61■□□□□ 0.73
LONRF3Q496Y0 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 TP73-AS1-210ENST00000637775 1455 ntBASIC19.61■□□□□ 0.73
LONRF3Q496Y0 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 OR6D1P-202ENST00000641007 5290 ntBASIC19.61■□□□□ 0.73
LONRF3Q496Y0 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 CA12-203ENST00000422263 2556 ntTSL 2 BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LONRF3Q496Y0 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
LONRF3Q496Y0 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LONRF3Q496Y0 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LONRF3Q496Y0 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC19.6■□□□□ 0.73
LONRF3Q496Y0 FLJ38576-201ENST00000623820 2459 ntBASIC19.6■□□□□ 0.73
LONRF3Q496Y0 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
LONRF3Q496Y0 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LONRF3Q496Y0 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LONRF3Q496Y0 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC19.6■□□□□ 0.73
LONRF3Q496Y0 POM121L3P-201ENST00000419331 1163 ntBASIC19.6■□□□□ 0.73
LONRF3Q496Y0 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.6■□□□□ 0.73
LONRF3Q496Y0 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
LONRF3Q496Y0 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
LONRF3Q496Y0 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LONRF3Q496Y0 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
LONRF3Q496Y0 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LONRF3Q496Y0 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
LONRF3Q496Y0 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LONRF3Q496Y0 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19.6■□□□□ 0.73
LONRF3Q496Y0 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC19.6■□□□□ 0.73
LONRF3Q496Y0 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC19.6■□□□□ 0.73
LONRF3Q496Y0 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC19.59■□□□□ 0.73
LONRF3Q496Y0 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
LONRF3Q496Y0 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC19.59■□□□□ 0.73
LONRF3Q496Y0 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LONRF3Q496Y0 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
LONRF3Q496Y0 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LONRF3Q496Y0 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.59■□□□□ 0.73
LONRF3Q496Y0 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.59■□□□□ 0.73
LONRF3Q496Y0 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LONRF3Q496Y0 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
LONRF3Q496Y0 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms