Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 NARF-206ENST00000457415 1668 ntTSL 5 BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 ANKRD19P-201ENST00000338192 862 ntBASIC18.02■□□□□ 0.48
CHD9Q3L8U1 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.02■□□□□ 0.48
CHD9Q3L8U1 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.02■□□□□ 0.48
CHD9Q3L8U1 RN7SL752P-201ENST00000463779 287 ntBASIC18.02■□□□□ 0.48
CHD9Q3L8U1 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 AC099568.2-201ENST00000609194 695 ntBASIC18.02■□□□□ 0.48
CHD9Q3L8U1 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
CHD9Q3L8U1 GPR182-203ENST00000622922 591 ntBASIC18.02■□□□□ 0.48
CHD9Q3L8U1 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
CHD9Q3L8U1 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CHD9Q3L8U1 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.02■□□□□ 0.47
CHD9Q3L8U1 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CHD9Q3L8U1 AC142381.1-201ENST00000426099 345 ntBASIC18.01■□□□□ 0.47
CHD9Q3L8U1 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 HCG4-201ENST00000418983 998 ntBASIC18.01■□□□□ 0.47
CHD9Q3L8U1 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 AC008494.3-201ENST00000606615 944 ntBASIC18.01■□□□□ 0.47
CHD9Q3L8U1 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 AC087499.5-201ENST00000452760 1342 ntBASIC18.01■□□□□ 0.47
CHD9Q3L8U1 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 ZNF890P-202ENST00000530367 1156 ntBASIC18.01■□□□□ 0.47
CHD9Q3L8U1 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 AL031055.1-201ENST00000606362 631 ntBASIC18.01■□□□□ 0.47
CHD9Q3L8U1 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CHD9Q3L8U1 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CHD9Q3L8U1 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHD9Q3L8U1 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CHD9Q3L8U1 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHD9Q3L8U1 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHD9Q3L8U1 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18■□□□□ 0.47
CHD9Q3L8U1 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHD9Q3L8U1 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHD9Q3L8U1 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CHD9Q3L8U1 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHD9Q3L8U1 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18■□□□□ 0.47
CHD9Q3L8U1 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHD9Q3L8U1 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC18■□□□□ 0.47
CHD9Q3L8U1 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC18■□□□□ 0.47
CHD9Q3L8U1 MIR4538-201ENST00000581377 78 ntBASIC18■□□□□ 0.47
CHD9Q3L8U1 CHCHD2P3-201ENST00000603038 451 ntBASIC18■□□□□ 0.47
CHD9Q3L8U1 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18■□□□□ 0.47
CHD9Q3L8U1 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHD9Q3L8U1 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18■□□□□ 0.47
CHD9Q3L8U1 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHD9Q3L8U1 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHD9Q3L8U1 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHD9Q3L8U1 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18■□□□□ 0.47
CHD9Q3L8U1 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHD9Q3L8U1 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHD9Q3L8U1 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC18■□□□□ 0.47
CHD9Q3L8U1 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms