Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LIM2P55344 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.37■□□□□ 0.21
LIM2P55344 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
LIM2P55344 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LIM2P55344 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LIM2P55344 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIM2P55344 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LIM2P55344 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LIM2P55344 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
LIM2P55344 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIM2P55344 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LIM2P55344 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIM2P55344 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIM2P55344 ACTG1P4-201ENST00000425123 1122 ntBASIC16.37■□□□□ 0.21
LIM2P55344 TPM4P1-201ENST00000436100 807 ntBASIC16.37■□□□□ 0.21
LIM2P55344 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.37■□□□□ 0.21
LIM2P55344 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.37■□□□□ 0.21
LIM2P55344 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.37■□□□□ 0.21
LIM2P55344 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.37■□□□□ 0.21
LIM2P55344 AC064862.7-201ENST00000604520 867 ntBASIC16.37■□□□□ 0.21
LIM2P55344 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.37■□□□□ 0.21
LIM2P55344 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.37■□□□□ 0.21
LIM2P55344 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LIM2P55344 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.37■□□□□ 0.21
LIM2P55344 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
LIM2P55344 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LIM2P55344 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
LIM2P55344 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.37■□□□□ 0.21
LIM2P55344 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.37■□□□□ 0.21
LIM2P55344 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
LIM2P55344 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIM2P55344 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIM2P55344 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.37■□□□□ 0.21
LIM2P55344 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIM2P55344 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIM2P55344 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
LIM2P55344 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIM2P55344 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIM2P55344 AC093525.9-201ENST00000624961 1746 ntBASIC16.36■□□□□ 0.21
LIM2P55344 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIM2P55344 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIM2P55344 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LIM2P55344 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.36■□□□□ 0.21
LIM2P55344 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.36■□□□□ 0.21
LIM2P55344 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.36■□□□□ 0.21
LIM2P55344 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIM2P55344 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
LIM2P55344 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIM2P55344 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIM2P55344 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LIM2P55344 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
LIM2P55344 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.36■□□□□ 0.21
LIM2P55344 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.36■□□□□ 0.21
LIM2P55344 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIM2P55344 FAM197Y8-203ENST00000450145 560 ntBASIC16.36■□□□□ 0.21
LIM2P55344 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.36■□□□□ 0.21
LIM2P55344 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.36■□□□□ 0.21
LIM2P55344 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.36■□□□□ 0.21
LIM2P55344 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
LIM2P55344 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
LIM2P55344 AC104692.2-201ENST00000603054 253 ntBASIC16.36■□□□□ 0.21
LIM2P55344 AC025062.2-201ENST00000605477 670 ntBASIC16.36■□□□□ 0.21
LIM2P55344 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.36■□□□□ 0.21
LIM2P55344 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
LIM2P55344 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LIM2P55344 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LIM2P55344 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIM2P55344 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.36■□□□□ 0.21
LIM2P55344 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
LIM2P55344 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIM2P55344 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LIM2P55344 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
LIM2P55344 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.35■□□□□ 0.21
LIM2P55344 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.35■□□□□ 0.21
LIM2P55344 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
LIM2P55344 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIM2P55344 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
LIM2P55344 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.35■□□□□ 0.21
LIM2P55344 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LIM2P55344 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
LIM2P55344 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.35■□□□□ 0.21
LIM2P55344 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
LIM2P55344 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIM2P55344 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.35■□□□□ 0.21
LIM2P55344 SLC25A1P3-201ENST00000395415 828 ntBASIC16.35■□□□□ 0.21
LIM2P55344 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.35■□□□□ 0.21
LIM2P55344 LINC00982-205ENST00000420957 435 ntBASIC16.35■□□□□ 0.21
LIM2P55344 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.35■□□□□ 0.21
LIM2P55344 RNPS1P1-201ENST00000507437 918 ntBASIC16.35■□□□□ 0.21
LIM2P55344 AC073648.2-201ENST00000510116 352 ntBASIC16.35■□□□□ 0.21
LIM2P55344 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.35■□□□□ 0.21
LIM2P55344 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.35■□□□□ 0.21
LIM2P55344 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.35■□□□□ 0.21
LIM2P55344 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.35■□□□□ 0.21
LIM2P55344 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.35■□□□□ 0.21
LIM2P55344 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIM2P55344 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.35■□□□□ 0.21
LIM2P55344 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LIM2P55344 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
LIM2P55344 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms