Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH6P52701 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH6P52701 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
MSH6P52701 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC23.6■■□□□ 1.37
MSH6P52701 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC23.6■■□□□ 1.37
MSH6P52701 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH6P52701 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC23.6■■□□□ 1.37
MSH6P52701 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
MSH6P52701 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
MSH6P52701 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
MSH6P52701 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC23.6■■□□□ 1.37
MSH6P52701 AC142381.1-201ENST00000426099 345 ntBASIC23.6■■□□□ 1.37
MSH6P52701 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
MSH6P52701 SLC25A6P5-201ENST00000435663 894 ntBASIC23.6■■□□□ 1.37
MSH6P52701 RN7SL752P-201ENST00000463779 287 ntBASIC23.6■■□□□ 1.37
MSH6P52701 MTRF1LP2-201ENST00000506027 1122 ntBASIC23.6■■□□□ 1.37
MSH6P52701 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
MSH6P52701 AC132938.2-201ENST00000579188 680 ntBASIC23.6■■□□□ 1.37
MSH6P52701 AL591163.1-201ENST00000641757 987 ntBASIC23.6■■□□□ 1.37
MSH6P52701 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH6P52701 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC23.6■■□□□ 1.37
MSH6P52701 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC23.6■■□□□ 1.37
MSH6P52701 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
MSH6P52701 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC23.6■■□□□ 1.37
MSH6P52701 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC23.6■■□□□ 1.37
MSH6P52701 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH6P52701 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
MSH6P52701 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
MSH6P52701 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC23.59■■□□□ 1.37
MSH6P52701 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC23.59■■□□□ 1.37
MSH6P52701 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC23.59■■□□□ 1.37
MSH6P52701 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC23.59■■□□□ 1.37
MSH6P52701 PRR29-204ENST00000577953 565 ntTSL 4 BASIC23.59■■□□□ 1.37
MSH6P52701 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
MSH6P52701 AL844908.2-201ENST00000609461 460 ntBASIC23.59■■□□□ 1.37
MSH6P52701 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC23.59■■□□□ 1.37
MSH6P52701 AC016027.1-202ENST00000607927 1699 ntBASIC23.59■■□□□ 1.37
MSH6P52701 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
MSH6P52701 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC23.59■■□□□ 1.37
MSH6P52701 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC23.59■■□□□ 1.37
MSH6P52701 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
MSH6P52701 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
MSH6P52701 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
MSH6P52701 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC23.58■■□□□ 1.37
MSH6P52701 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
MSH6P52701 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
MSH6P52701 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
MSH6P52701 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
MSH6P52701 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.37
MSH6P52701 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
MSH6P52701 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC23.58■■□□□ 1.37
MSH6P52701 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC23.58■■□□□ 1.37
MSH6P52701 KRT17P8-201ENST00000540749 863 ntBASIC23.58■■□□□ 1.37
MSH6P52701 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC23.58■■□□□ 1.37
MSH6P52701 RAB43P1-201ENST00000561790 589 ntBASIC23.58■■□□□ 1.37
MSH6P52701 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC23.58■■□□□ 1.37
MSH6P52701 RNA5-8SN1-201ENST00000610460 153 ntBASIC23.58■■□□□ 1.37
MSH6P52701 RNA5-8SN5-202ENST00000612463 153 ntBASIC23.58■■□□□ 1.37
MSH6P52701 RNA5-8SN4-201ENST00000613359 153 ntBASIC23.58■■□□□ 1.37
MSH6P52701 RNA5-8SN5-201ENST00000619471 153 ntBASIC23.58■■□□□ 1.37
MSH6P52701 AC004408.2-201ENST00000623613 2777 ntBASIC23.58■■□□□ 1.36
MSH6P52701 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC23.57■■□□□ 1.36
MSH6P52701 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC23.57■■□□□ 1.36
MSH6P52701 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
MSH6P52701 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC23.57■■□□□ 1.36
MSH6P52701 HCG4-201ENST00000418983 998 ntBASIC23.57■■□□□ 1.36
MSH6P52701 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC23.57■■□□□ 1.36
MSH6P52701 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC23.57■■□□□ 1.36
MSH6P52701 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC23.57■■□□□ 1.36
MSH6P52701 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC23.57■■□□□ 1.36
MSH6P52701 AC104794.3-201ENST00000566840 1248 ntBASIC23.57■■□□□ 1.36
MSH6P52701 AC004840.1-201ENST00000636359 365 ntBASIC23.57■■□□□ 1.36
MSH6P52701 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
MSH6P52701 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
MSH6P52701 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
MSH6P52701 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
MSH6P52701 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
MSH6P52701 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC23.57■■□□□ 1.36
MSH6P52701 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
MSH6P52701 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
MSH6P52701 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
MSH6P52701 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
MSH6P52701 AL353732.1-201ENST00000569618 1459 ntBASIC23.57■■□□□ 1.36
MSH6P52701 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC23.57■■□□□ 1.36
MSH6P52701 AC087499.5-201ENST00000452760 1342 ntBASIC23.57■■□□□ 1.36
MSH6P52701 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC23.57■■□□□ 1.36
MSH6P52701 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC23.56■■□□□ 1.36
MSH6P52701 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
MSH6P52701 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC23.56■■□□□ 1.36
MSH6P52701 DFFBP1-201ENST00000433250 979 ntBASIC23.56■■□□□ 1.36
MSH6P52701 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC23.56■■□□□ 1.36
MSH6P52701 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC23.56■■□□□ 1.36
MSH6P52701 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC23.56■■□□□ 1.36
MSH6P52701 MIR4525-201ENST00000580000 75 ntBASIC23.56■■□□□ 1.36
MSH6P52701 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
MSH6P52701 TEX28P1-201ENST00000613479 1221 ntBASIC23.56■■□□□ 1.36
MSH6P52701 TEX28P2-201ENST00000617764 1221 ntBASIC23.56■■□□□ 1.36
MSH6P52701 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC23.56■■□□□ 1.36
MSH6P52701 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC23.56■■□□□ 1.36
MSH6P52701 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC23.56■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms