Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 SLC25A1P3-201ENST00000395415 828 ntBASIC15.23■□□□□ 0.03
SOX2P48431 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX2P48431 DDT-203ENST00000403754 569 ntTSL 3 BASIC15.23■□□□□ 0.03
SOX2P48431 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SOX2P48431 DDT-206ENST00000430101 573 ntTSL 2 BASIC15.23■□□□□ 0.03
SOX2P48431 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC15.23■□□□□ 0.03
SOX2P48431 GXYLT1P4-201ENST00000613576 1192 ntBASIC15.23■□□□□ 0.03
SOX2P48431 LITAF-220ENST00000620789 692 ntTSL 5 BASIC15.23■□□□□ 0.03
SOX2P48431 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SOX2P48431 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.23■□□□□ 0.03
SOX2P48431 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
SOX2P48431 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SOX2P48431 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX2P48431 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SOX2P48431 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SOX2P48431 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC15.23■□□□□ 0.03
SOX2P48431 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX2P48431 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
SOX2P48431 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX2P48431 AL353692.3-201ENST00000407031 1396 ntBASIC15.23■□□□□ 0.03
SOX2P48431 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
SOX2P48431 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.23■□□□□ 0.03
SOX2P48431 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SOX2P48431 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX2P48431 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX2P48431 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX2P48431 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SOX2P48431 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX2P48431 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SOX2P48431 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SOX2P48431 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC15.22■□□□□ 0.03
SOX2P48431 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SOX2P48431 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC15.22■□□□□ 0.03
SOX2P48431 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SOX2P48431 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.22■□□□□ 0.03
SOX2P48431 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC15.22■□□□□ 0.03
SOX2P48431 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.22■□□□□ 0.03
SOX2P48431 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC15.22■□□□□ 0.03
SOX2P48431 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
SOX2P48431 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC15.22■□□□□ 0.03
SOX2P48431 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
SOX2P48431 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.22■□□□□ 0.03
SOX2P48431 SPDYE15P-201ENST00000424157 909 ntBASIC15.22■□□□□ 0.03
SOX2P48431 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC15.22■□□□□ 0.03
SOX2P48431 AP003733.1-201ENST00000491725 852 ntBASIC15.22■□□□□ 0.03
SOX2P48431 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
SOX2P48431 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC15.22■□□□□ 0.03
SOX2P48431 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC15.22■□□□□ 0.03
SOX2P48431 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX2P48431 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX2P48431 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX2P48431 AC092068.3-201ENST00000587894 2016 ntBASIC15.22■□□□□ 0.03
SOX2P48431 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.22■□□□□ 0.03
SOX2P48431 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX2P48431 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SOX2P48431 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
SOX2P48431 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
SOX2P48431 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
SOX2P48431 AC046158.3-201ENST00000624947 2558 ntBASIC15.22■□□□□ 0.03
SOX2P48431 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX2P48431 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SOX2P48431 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SOX2P48431 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
SOX2P48431 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
SOX2P48431 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SOX2P48431 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
SOX2P48431 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC15.21■□□□□ 0.03
SOX2P48431 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SOX2P48431 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.21■□□□□ 0.03
SOX2P48431 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SOX2P48431 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SOX2P48431 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.21■□□□□ 0.03
SOX2P48431 LINC02199-201ENST00000506655 2702 ntBASIC15.21■□□□□ 0.03
SOX2P48431 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SOX2P48431 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SOX2P48431 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC15.21■□□□□ 0.03
SOX2P48431 ANKRD20A18P-201ENST00000359341 492 ntBASIC15.21■□□□□ 0.03
SOX2P48431 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SOX2P48431 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
SOX2P48431 IGHGP-201ENST00000390555 1178 ntBASIC15.21■□□□□ 0.03
SOX2P48431 FAM8A6P-201ENST00000407496 1135 ntBASIC15.21■□□□□ 0.03
SOX2P48431 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC15.21■□□□□ 0.03
SOX2P48431 HLA-F-220ENST00000434407 884 ntBASIC15.21■□□□□ 0.03
SOX2P48431 AC068472.1-201ENST00000474589 881 ntBASIC15.21■□□□□ 0.03
SOX2P48431 AC002558.1-201ENST00000488906 803 ntBASIC15.21■□□□□ 0.03
SOX2P48431 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SOX2P48431 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SOX2P48431 ZNF444P1-201ENST00000559497 298 ntBASIC15.21■□□□□ 0.03
SOX2P48431 AL441883.1-201ENST00000566170 1045 ntBASIC15.21■□□□□ 0.03
SOX2P48431 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SOX2P48431 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
SOX2P48431 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.21■□□□□ 0.03
SOX2P48431 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.21■□□□□ 0.03
SOX2P48431 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
SOX2P48431 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
SOX2P48431 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
SOX2P48431 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
SOX2P48431 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SOX2P48431 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SOX2P48431 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms