Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.18■□□□□ 0.34
MSH3P20585 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.18■□□□□ 0.34
MSH3P20585 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
MSH3P20585 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
MSH3P20585 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH3P20585 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
MSH3P20585 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH3P20585 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
MSH3P20585 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH3P20585 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH3P20585 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH3P20585 AL135999.2-201ENST00000622438 1686 ntBASIC17.18■□□□□ 0.34
MSH3P20585 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.18■□□□□ 0.34
MSH3P20585 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.18■□□□□ 0.34
MSH3P20585 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.18■□□□□ 0.34
MSH3P20585 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.18■□□□□ 0.34
MSH3P20585 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.18■□□□□ 0.34
MSH3P20585 AC021087.4-201ENST00000563761 564 ntBASIC17.18■□□□□ 0.34
MSH3P20585 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
MSH3P20585 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.18■□□□□ 0.34
MSH3P20585 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
MSH3P20585 MTDHP4-201ENST00000600287 670 ntBASIC17.18■□□□□ 0.34
MSH3P20585 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.18■□□□□ 0.34
MSH3P20585 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH3P20585 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
MSH3P20585 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MSH3P20585 AC097637.2-201ENST00000624096 1997 ntBASIC17.18■□□□□ 0.34
MSH3P20585 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.18■□□□□ 0.34
MSH3P20585 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MSH3P20585 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
MSH3P20585 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MSH3P20585 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
MSH3P20585 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH3P20585 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH3P20585 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MSH3P20585 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH3P20585 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.17■□□□□ 0.34
MSH3P20585 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.17■□□□□ 0.34
MSH3P20585 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH3P20585 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH3P20585 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
MSH3P20585 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MSH3P20585 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.17■□□□□ 0.34
MSH3P20585 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.17■□□□□ 0.34
MSH3P20585 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.17■□□□□ 0.34
MSH3P20585 AF186996.4-201ENST00000467186 377 ntBASIC17.17■□□□□ 0.34
MSH3P20585 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.17■□□□□ 0.34
MSH3P20585 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.17■□□□□ 0.34
MSH3P20585 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
MSH3P20585 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.17■□□□□ 0.34
MSH3P20585 AL121894.2-201ENST00000602977 491 ntBASIC17.17■□□□□ 0.34
MSH3P20585 TP73-AS1-207ENST00000624167 988 ntBASIC17.17■□□□□ 0.34
MSH3P20585 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH3P20585 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH3P20585 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH3P20585 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MSH3P20585 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
MSH3P20585 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.17■□□□□ 0.34
MSH3P20585 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MSH3P20585 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH3P20585 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
MSH3P20585 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.17■□□□□ 0.34
MSH3P20585 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH3P20585 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH3P20585 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH3P20585 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.16■□□□□ 0.34
MSH3P20585 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.16■□□□□ 0.34
MSH3P20585 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.16■□□□□ 0.34
MSH3P20585 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.16■□□□□ 0.34
MSH3P20585 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH3P20585 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.16■□□□□ 0.34
MSH3P20585 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH3P20585 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.16■□□□□ 0.34
MSH3P20585 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
MSH3P20585 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH3P20585 CROCCP2-202ENST00000412962 2773 ntBASIC17.16■□□□□ 0.34
MSH3P20585 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH3P20585 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH3P20585 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.16■□□□□ 0.34
MSH3P20585 RNPS1P1-201ENST00000507437 918 ntBASIC17.16■□□□□ 0.34
MSH3P20585 AL160237.2-201ENST00000556165 472 ntBASIC17.16■□□□□ 0.34
MSH3P20585 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.16■□□□□ 0.34
MSH3P20585 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.16■□□□□ 0.34
MSH3P20585 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.16■□□□□ 0.34
MSH3P20585 AC064862.7-201ENST00000604520 867 ntBASIC17.16■□□□□ 0.34
MSH3P20585 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.16■□□□□ 0.34
MSH3P20585 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.16■□□□□ 0.34
MSH3P20585 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH3P20585 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH3P20585 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MSH3P20585 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH3P20585 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
MSH3P20585 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.16■□□□□ 0.34
MSH3P20585 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.16■□□□□ 0.34
MSH3P20585 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MSH3P20585 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.16■□□□□ 0.34
MSH3P20585 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH3P20585 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH3P20585 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.16■□□□□ 0.34
MSH3P20585 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms