Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 PFN1P12-201ENST00000455938 534 ntBASIC17.72■□□□□ 0.43
COL6A3P12111 RPL13AP20-201ENST00000459725 609 ntBASIC17.72■□□□□ 0.43
COL6A3P12111 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC17.72■□□□□ 0.43
COL6A3P12111 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC17.72■□□□□ 0.43
COL6A3P12111 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.72■□□□□ 0.43
COL6A3P12111 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A3P12111 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A3P12111 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC17.72■□□□□ 0.43
COL6A3P12111 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A3P12111 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A3P12111 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A3P12111 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.71■□□□□ 0.43
COL6A3P12111 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A3P12111 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A3P12111 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC17.71■□□□□ 0.43
COL6A3P12111 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC17.71■□□□□ 0.43
COL6A3P12111 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
COL6A3P12111 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.71■□□□□ 0.43
COL6A3P12111 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC17.71■□□□□ 0.43
COL6A3P12111 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A3P12111 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.71■□□□□ 0.43
COL6A3P12111 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
COL6A3P12111 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A3P12111 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A3P12111 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A3P12111 MPV17-206ENST00000402722 827 ntTSL 3 BASIC17.71■□□□□ 0.43
COL6A3P12111 AC142381.1-201ENST00000426099 345 ntBASIC17.71■□□□□ 0.43
COL6A3P12111 RIT1-205ENST00000539040 919 ntTSL 2 BASIC17.71■□□□□ 0.43
COL6A3P12111 DERL2-202ENST00000570848 657 ntTSL 5 BASIC17.71■□□□□ 0.43
COL6A3P12111 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
COL6A3P12111 MIR4515-201ENST00000584082 81 ntBASIC17.71■□□□□ 0.43
COL6A3P12111 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.71■□□□□ 0.43
COL6A3P12111 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC17.71■□□□□ 0.43
COL6A3P12111 LINC00896-202ENST00000609602 2128 ntBASIC17.71■□□□□ 0.43
COL6A3P12111 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A3P12111 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A3P12111 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
COL6A3P12111 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
COL6A3P12111 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A3P12111 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.71■□□□□ 0.43
COL6A3P12111 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A3P12111 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC17.71■□□□□ 0.42
COL6A3P12111 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC17.71■□□□□ 0.42
COL6A3P12111 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17.71■□□□□ 0.42
COL6A3P12111 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A3P12111 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A3P12111 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A3P12111 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.7■□□□□ 0.42
COL6A3P12111 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A3P12111 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
COL6A3P12111 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.7■□□□□ 0.42
COL6A3P12111 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.7■□□□□ 0.42
COL6A3P12111 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.7■□□□□ 0.42
COL6A3P12111 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A3P12111 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
COL6A3P12111 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.7■□□□□ 0.42
COL6A3P12111 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
COL6A3P12111 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
COL6A3P12111 PHGDH-209ENST00000641074 1780 ntBASIC17.7■□□□□ 0.42
COL6A3P12111 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A3P12111 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A3P12111 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A3P12111 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.7■□□□□ 0.42
COL6A3P12111 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
COL6A3P12111 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A3P12111 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC17.7■□□□□ 0.42
COL6A3P12111 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
COL6A3P12111 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A3P12111 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC17.7■□□□□ 0.42
COL6A3P12111 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC17.7■□□□□ 0.42
COL6A3P12111 AL589739.1-201ENST00000607720 493 ntBASIC17.7■□□□□ 0.42
COL6A3P12111 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A3P12111 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A3P12111 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A3P12111 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A3P12111 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A3P12111 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A3P12111 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.69■□□□□ 0.42
COL6A3P12111 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A3P12111 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A3P12111 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.69■□□□□ 0.42
COL6A3P12111 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC17.69■□□□□ 0.42
COL6A3P12111 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC17.69■□□□□ 0.42
COL6A3P12111 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC17.69■□□□□ 0.42
COL6A3P12111 RN7SL769P-201ENST00000469386 295 ntBASIC17.69■□□□□ 0.42
COL6A3P12111 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A3P12111 BANF1P1-201ENST00000553684 263 ntBASIC17.69■□□□□ 0.42
COL6A3P12111 CHMP4BP1-201ENST00000556017 588 ntBASIC17.69■□□□□ 0.42
COL6A3P12111 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC17.69■□□□□ 0.42
COL6A3P12111 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.69■□□□□ 0.42
COL6A3P12111 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A3P12111 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.69■□□□□ 0.42
COL6A3P12111 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC17.69■□□□□ 0.42
COL6A3P12111 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
COL6A3P12111 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A3P12111 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
COL6A3P12111 AC016027.1-202ENST00000607927 1699 ntBASIC17.69■□□□□ 0.42
COL6A3P12111 AL627389.1-201ENST00000413508 1182 ntBASIC17.69■□□□□ 0.42
COL6A3P12111 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A3P12111 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms