Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDKL5O76039 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDKL5O76039 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC20.06■□□□□ 0.8
CDKL5O76039 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDKL5O76039 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDKL5O76039 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC20.05■□□□□ 0.8
CDKL5O76039 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDKL5O76039 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC20.05■□□□□ 0.8
CDKL5O76039 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDKL5O76039 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDKL5O76039 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDKL5O76039 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDKL5O76039 AC004817.3-201ENST00000602957 2129 ntBASIC20.05■□□□□ 0.8
CDKL5O76039 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDKL5O76039 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDKL5O76039 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CDKL5O76039 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDKL5O76039 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.05■□□□□ 0.8
CDKL5O76039 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDKL5O76039 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDKL5O76039 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC20.05■□□□□ 0.8
CDKL5O76039 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.05■□□□□ 0.8
CDKL5O76039 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
CDKL5O76039 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC20.05■□□□□ 0.8
CDKL5O76039 CYB561-217ENST00000582997 877 ntTSL 5 BASIC20.05■□□□□ 0.8
CDKL5O76039 MTDHP3-201ENST00000594186 672 ntBASIC20.05■□□□□ 0.8
CDKL5O76039 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC20.05■□□□□ 0.8
CDKL5O76039 AL355877.3-201ENST00000622820 899 ntBASIC20.05■□□□□ 0.8
CDKL5O76039 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC20.05■□□□□ 0.8
CDKL5O76039 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDKL5O76039 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
CDKL5O76039 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDKL5O76039 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC20.05■□□□□ 0.8
CDKL5O76039 AC092053.1-201ENST00000605787 1936 ntBASIC20.05■□□□□ 0.8
CDKL5O76039 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDKL5O76039 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDKL5O76039 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDKL5O76039 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDKL5O76039 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDKL5O76039 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDKL5O76039 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDKL5O76039 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC20.04■□□□□ 0.8
CDKL5O76039 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CDKL5O76039 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC20.04■□□□□ 0.8
CDKL5O76039 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CDKL5O76039 LINC00982-205ENST00000420957 435 ntBASIC20.04■□□□□ 0.8
CDKL5O76039 BX005266.1-201ENST00000473402 457 ntBASIC20.04■□□□□ 0.8
CDKL5O76039 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC20.04■□□□□ 0.8
CDKL5O76039 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC20.04■□□□□ 0.8
CDKL5O76039 CLEC4GP1-201ENST00000596555 870 ntBASIC20.04■□□□□ 0.8
CDKL5O76039 REXO1L6P-202ENST00000619970 1078 ntBASIC20.04■□□□□ 0.8
CDKL5O76039 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CDKL5O76039 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CDKL5O76039 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDKL5O76039 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDKL5O76039 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC20.04■□□□□ 0.8
CDKL5O76039 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CDKL5O76039 AC022211.2-201ENST00000585075 2527 ntBASIC20.04■□□□□ 0.8
CDKL5O76039 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CDKL5O76039 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDKL5O76039 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CDKL5O76039 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CDKL5O76039 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC20.03■□□□□ 0.8
CDKL5O76039 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.03■□□□□ 0.8
CDKL5O76039 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.03■□□□□ 0.8
CDKL5O76039 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
CDKL5O76039 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.03■□□□□ 0.8
CDKL5O76039 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.03■□□□□ 0.8
CDKL5O76039 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC20.03■□□□□ 0.8
CDKL5O76039 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.03■□□□□ 0.8
CDKL5O76039 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 NKAPP1-205ENST00000585790 367 ntBASIC20.03■□□□□ 0.8
CDKL5O76039 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.03■□□□□ 0.8
CDKL5O76039 AC008608.2-201ENST00000606089 416 ntBASIC20.03■□□□□ 0.8
CDKL5O76039 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CDKL5O76039 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDKL5O76039 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms