Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
CACNA1FO60840 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
CACNA1FO60840 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CACNA1FO60840 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CACNA1FO60840 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.47■■□□□ 1.03
CACNA1FO60840 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CACNA1FO60840 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC21.47■■□□□ 1.03
CACNA1FO60840 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
CACNA1FO60840 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC21.47■■□□□ 1.03
CACNA1FO60840 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CACNA1FO60840 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CACNA1FO60840 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CACNA1FO60840 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CACNA1FO60840 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC21.47■■□□□ 1.03
CACNA1FO60840 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CACNA1FO60840 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CACNA1FO60840 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CACNA1FO60840 GPX1P2-201ENST00000429271 606 ntBASIC21.47■■□□□ 1.03
CACNA1FO60840 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC21.47■■□□□ 1.03
CACNA1FO60840 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CACNA1FO60840 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC21.46■■□□□ 1.03
CACNA1FO60840 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
CACNA1FO60840 AC025580.3-201ENST00000617932 1424 ntBASIC21.46■■□□□ 1.03
CACNA1FO60840 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CACNA1FO60840 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CACNA1FO60840 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CACNA1FO60840 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
CACNA1FO60840 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CACNA1FO60840 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC21.46■■□□□ 1.03
CACNA1FO60840 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
CACNA1FO60840 AC092919.2-201ENST00000623631 1645 ntBASIC21.46■■□□□ 1.03
CACNA1FO60840 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
CACNA1FO60840 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CACNA1FO60840 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CACNA1FO60840 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CACNA1FO60840 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CACNA1FO60840 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
CACNA1FO60840 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CACNA1FO60840 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CACNA1FO60840 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CACNA1FO60840 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CACNA1FO60840 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CACNA1FO60840 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
CACNA1FO60840 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC21.45■■□□□ 1.03
CACNA1FO60840 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
CACNA1FO60840 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
CACNA1FO60840 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC21.45■■□□□ 1.02
CACNA1FO60840 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CACNA1FO60840 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC21.45■■□□□ 1.02
CACNA1FO60840 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC21.45■■□□□ 1.02
CACNA1FO60840 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CACNA1FO60840 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC21.45■■□□□ 1.02
CACNA1FO60840 AC091812.2-201ENST00000619081 385 ntBASIC21.45■■□□□ 1.02
CACNA1FO60840 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CACNA1FO60840 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CACNA1FO60840 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
CACNA1FO60840 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CACNA1FO60840 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC21.45■■□□□ 1.02
CACNA1FO60840 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CACNA1FO60840 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
CACNA1FO60840 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CACNA1FO60840 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
CACNA1FO60840 WASH6P-202ENST00000359512 1437 ntBASIC21.45■■□□□ 1.02
CACNA1FO60840 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC21.45■■□□□ 1.02
CACNA1FO60840 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CACNA1FO60840 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC21.45■■□□□ 1.02
CACNA1FO60840 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CACNA1FO60840 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC21.45■■□□□ 1.02
CACNA1FO60840 AC254562.1-201ENST00000417586 456 ntBASIC21.45■■□□□ 1.02
CACNA1FO60840 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CACNA1FO60840 YBX1P5-201ENST00000509441 847 ntBASIC21.45■■□□□ 1.02
CACNA1FO60840 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CACNA1FO60840 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC21.45■■□□□ 1.02
CACNA1FO60840 PCDHB17P-201ENST00000539533 2393 ntBASIC21.45■■□□□ 1.02
CACNA1FO60840 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CACNA1FO60840 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC21.45■■□□□ 1.02
CACNA1FO60840 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
CACNA1FO60840 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC21.44■■□□□ 1.02
CACNA1FO60840 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CACNA1FO60840 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
CACNA1FO60840 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
CACNA1FO60840 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
CACNA1FO60840 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
CACNA1FO60840 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
CACNA1FO60840 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CACNA1FO60840 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CACNA1FO60840 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC21.44■■□□□ 1.02
CACNA1FO60840 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC21.44■■□□□ 1.02
CACNA1FO60840 AC055717.3-201ENST00000622967 595 ntBASIC21.44■■□□□ 1.02
CACNA1FO60840 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC21.44■■□□□ 1.02
CACNA1FO60840 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
CACNA1FO60840 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC21.44■■□□□ 1.02
CACNA1FO60840 AKAP8P1-201ENST00000434743 1349 ntBASIC21.44■■□□□ 1.02
CACNA1FO60840 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC21.44■■□□□ 1.02
CACNA1FO60840 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CACNA1FO60840 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CACNA1FO60840 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
CACNA1FO60840 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CACNA1FO60840 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CACNA1FO60840 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms