Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 NSUN5P1-202ENST00000421140 1535 ntBASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 NSUN5P2-203ENST00000457352 1529 ntBASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 IGHV3-47-201ENST00000425060 335 ntBASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 KRT17P6-201ENST00000453795 1220 ntBASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 PMPCAP1-201ENST00000508114 1576 ntBASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
TCRBV7S3A2A0A539 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TCRBV7S3A2A0A539 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TCRBV7S3A2A0A539 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
TCRBV7S3A2A0A539 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TCRBV7S3A2A0A539 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TCRBV7S3A2A0A539 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TCRBV7S3A2A0A539 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TCRBV7S3A2A0A539 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TCRBV7S3A2A0A539 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.52■□□□□ 0.4
TCRBV7S3A2A0A539 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TCRBV7S3A2A0A539 AC096582.2-201ENST00000510860 516 ntBASIC17.52■□□□□ 0.4
TCRBV7S3A2A0A539 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.52■□□□□ 0.4
TCRBV7S3A2A0A539 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.52■□□□□ 0.4
TCRBV7S3A2A0A539 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.52■□□□□ 0.4
TCRBV7S3A2A0A539 MIR3180-1-201ENST00000580374 94 ntBASIC17.52■□□□□ 0.4
TCRBV7S3A2A0A539 MIR3180-3-201ENST00000584616 94 ntBASIC17.52■□□□□ 0.4
TCRBV7S3A2A0A539 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
TCRBV7S3A2A0A539 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
TCRBV7S3A2A0A539 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
TCRBV7S3A2A0A539 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.52■□□□□ 0.39
TCRBV7S3A2A0A539 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TCRBV7S3A2A0A539 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
TCRBV7S3A2A0A539 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
TCRBV7S3A2A0A539 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TCRBV7S3A2A0A539 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.52■□□□□ 0.39
TCRBV7S3A2A0A539 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
TCRBV7S3A2A0A539 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TCRBV7S3A2A0A539 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
TCRBV7S3A2A0A539 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 GPR89P-201ENST00000407924 1495 ntBASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 AL662844.4-201ENST00000606367 2838 ntBASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms