Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 TFAMP1-201ENST00000412727 736 ntBASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 AC015922.1-201ENST00000421102 1152 ntBASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 KRT18P32-201ENST00000424695 1287 ntBASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 AC005034.1-201ENST00000426657 489 ntBASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 AC087163.2-201ENST00000457299 853 ntBASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 SLC25A6P2-201ENST00000497974 877 ntBASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 RBM7-207ENST00000544582 692 ntTSL 3 BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 AL035252.4-201ENST00000624174 288 ntBASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
PCDHGA1Q9Y5H4 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 TUBB3P1-201ENST00000405796 1332 ntBASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 KLF2P3-201ENST00000451977 1087 ntBASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 AC079140.1-201ENST00000508039 487 ntBASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.52■□□□□ 0.24
PCDHGA1Q9Y5H4 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.52■□□□□ 0.23
PCDHGA1Q9Y5H4 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
PCDHGA1Q9Y5H4 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.52■□□□□ 0.23
PCDHGA1Q9Y5H4 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
PCDHGA1Q9Y5H4 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PCDHGA1Q9Y5H4 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PCDHGA1Q9Y5H4 AC093677.2-201ENST00000600169 1863 ntBASIC16.52■□□□□ 0.23
PCDHGA1Q9Y5H4 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
PCDHGA1Q9Y5H4 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.52■□□□□ 0.23
PCDHGA1Q9Y5H4 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PCDHGA1Q9Y5H4 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.23
PCDHGA1Q9Y5H4 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PCDHGA1Q9Y5H4 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 LTB4R2-202ENST00000528054 3092 ntBASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 FAM207CP-201ENST00000443486 507 ntBASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.51■□□□□ 0.23
PCDHGA1Q9Y5H4 RARRES2P8-201ENST00000566335 367 ntBASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms