Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 IGLL3P-201ENST00000412472 434 ntBASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 URGCP-206ENST00000446958 365 ntTSL 2 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 CIPC-205ENST00000555437 566 ntTSL 3 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 TK1-204ENST00000590430 683 ntTSL 3 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 AC023141.13-201ENST00000604991 943 ntBASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 C20orf181-201ENST00000623918 480 ntBASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CTDP1Q9Y5B0 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 DNAJB3-202ENST00000449667 1266 ntBASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 POLD4-207ENST00000531239 584 ntTSL 2 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 MIR4469-201ENST00000583919 79 ntBASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 AL078644.1-201ENST00000609881 752 ntBASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 AQP6-205ENST00000618286 829 ntTSL 5 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CTDP1Q9Y5B0 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 HTR5BP-201ENST00000430851 1154 ntBASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 ALG1L5P-201ENST00000482043 771 ntBASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CTDP1Q9Y5B0 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms