Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 AC002056.1-201ENST00000395613 760 ntBASIC17.7■□□□□ 0.42
TDP1Q9NUW8 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 AL645728.2-201ENST00000641974 660 ntBASIC17.7■□□□□ 0.42
TDP1Q9NUW8 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
TDP1Q9NUW8 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 AL121761.2-201ENST00000598007 1648 ntBASIC17.69■□□□□ 0.42
TDP1Q9NUW8 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 AC004461.1-201ENST00000412461 403 ntBASIC17.69■□□□□ 0.42
TDP1Q9NUW8 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 CYMP-203ENST00000474680 1263 ntBASIC17.69■□□□□ 0.42
TDP1Q9NUW8 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.69■□□□□ 0.42
TDP1Q9NUW8 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 TSEN15P1-201ENST00000423257 515 ntBASIC17.68■□□□□ 0.42
TDP1Q9NUW8 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TDP1Q9NUW8 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
TDP1Q9NUW8 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms