Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDX2Q99626 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
CDX2Q99626 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDX2Q99626 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDX2Q99626 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.81■□□□□ 0.44
CDX2Q99626 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDX2Q99626 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDX2Q99626 ANO7L1-203ENST00000602586 1720 ntBASIC17.81■□□□□ 0.44
CDX2Q99626 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDX2Q99626 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDX2Q99626 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDX2Q99626 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC17.8■□□□□ 0.44
CDX2Q99626 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDX2Q99626 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDX2Q99626 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDX2Q99626 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDX2Q99626 APOC3-202ENST00000375345 604 ntTSL 5 BASIC17.8■□□□□ 0.44
CDX2Q99626 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDX2Q99626 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC17.8■□□□□ 0.44
CDX2Q99626 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
CDX2Q99626 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC17.8■□□□□ 0.44
CDX2Q99626 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC17.8■□□□□ 0.44
CDX2Q99626 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC17.8■□□□□ 0.44
CDX2Q99626 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDX2Q99626 SPDYE18-201ENST00000510091 1050 ntBASIC17.8■□□□□ 0.44
CDX2Q99626 AGER-214ENST00000538695 487 ntTSL 2 BASIC17.8■□□□□ 0.44
CDX2Q99626 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC17.8■□□□□ 0.44
CDX2Q99626 MIR3615-201ENST00000581999 87 ntBASIC17.8■□□□□ 0.44
CDX2Q99626 RPS24-214ENST00000613865 538 ntTSL 5 BASIC17.8■□□□□ 0.44
CDX2Q99626 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDX2Q99626 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDX2Q99626 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.8■□□□□ 0.44
CDX2Q99626 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.8■□□□□ 0.44
CDX2Q99626 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDX2Q99626 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.8■□□□□ 0.44
CDX2Q99626 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CDX2Q99626 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDX2Q99626 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDX2Q99626 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDX2Q99626 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDX2Q99626 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.79■□□□□ 0.44
CDX2Q99626 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.79■□□□□ 0.44
CDX2Q99626 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDX2Q99626 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDX2Q99626 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDX2Q99626 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDX2Q99626 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDX2Q99626 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.79■□□□□ 0.44
CDX2Q99626 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDX2Q99626 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.79■□□□□ 0.44
CDX2Q99626 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDX2Q99626 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.79■□□□□ 0.44
CDX2Q99626 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDX2Q99626 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDX2Q99626 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17.79■□□□□ 0.44
CDX2Q99626 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CDX2Q99626 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC17.79■□□□□ 0.44
CDX2Q99626 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CDX2Q99626 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC17.79■□□□□ 0.44
CDX2Q99626 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.79■□□□□ 0.44
CDX2Q99626 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDX2Q99626 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDX2Q99626 AC108725.1-201ENST00000495472 409 ntBASIC17.79■□□□□ 0.44
CDX2Q99626 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.79■□□□□ 0.44
CDX2Q99626 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.79■□□□□ 0.44
CDX2Q99626 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.79■□□□□ 0.44
CDX2Q99626 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.79■□□□□ 0.44
CDX2Q99626 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC17.79■□□□□ 0.44
CDX2Q99626 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.79■□□□□ 0.44
CDX2Q99626 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.79■□□□□ 0.44
CDX2Q99626 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDX2Q99626 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CDX2Q99626 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.79■□□□□ 0.44
CDX2Q99626 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CDX2Q99626 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CDX2Q99626 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC17.78■□□□□ 0.44
CDX2Q99626 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDX2Q99626 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.78■□□□□ 0.44
CDX2Q99626 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDX2Q99626 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDX2Q99626 AL353732.1-201ENST00000569618 1459 ntBASIC17.78■□□□□ 0.44
CDX2Q99626 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.78■□□□□ 0.44
CDX2Q99626 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDX2Q99626 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDX2Q99626 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CDX2Q99626 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDX2Q99626 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.78■□□□□ 0.44
CDX2Q99626 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.78■□□□□ 0.44
CDX2Q99626 MIR3909-201ENST00000579518 119 ntBASIC17.78■□□□□ 0.44
CDX2Q99626 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDX2Q99626 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CDX2Q99626 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.78■□□□□ 0.44
CDX2Q99626 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDX2Q99626 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.78■□□□□ 0.44
CDX2Q99626 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDX2Q99626 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CDX2Q99626 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDX2Q99626 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC17.77■□□□□ 0.44
CDX2Q99626 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDX2Q99626 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms